Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0143
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   7.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   7.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   7.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 468 YAQDLEKTGSVIHMPVPSSYNDVGEDASLRDHVSLVWYDRXFHVPPW 608
           Y   + +TG V +    +S+ D  EDA LR  +  +       VP W
Sbjct: 535 YVHRIGRTGRVGNRGRATSFFDPEEDAPLRGDLVRILKQANQSVPDW 581


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 470 IPAISIAEFWVGRRWP 423
           +P +  A+F  G RWP
Sbjct: 79  LPPVQDADFCCGMRWP 94


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 372 RATETRDLRTLXGIWSFRPSPADPEFGYRNGWYAQDLE 485
           + T  R L T+ G+W    + + P     N W  ++LE
Sbjct: 147 KRTLKRVLATIAGVWILSGAISSPPLAGWNDW-PEELE 183


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 372 RATETRDLRTLXGIWSFRPSPADPEFGYRNGWYAQDLE 485
           + T  R L T+ G+W    + + P     N W  ++LE
Sbjct: 147 KRTLKRVLATIAGVWILSGAISSPPLAGWNDW-PEELE 183


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 372 RATETRDLRTLXGIWSFRPSPADPEFGYRNGWYAQDLE 485
           + T  R L T+ G+W    + + P     N W  ++LE
Sbjct: 147 KRTLKRVLATIAGVWILSGAISSPPLAGWNDW-PEELE 183


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 301 DSGTTAIVTDTMH 263
           +SGTT + T TMH
Sbjct: 454 ESGTTTLQTRTMH 466


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,154
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)