Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0143
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35470.1 68417.m05041 leucine-rich repeat family protein simi...    29   2.6  
At2g20890.1 68415.m02462 expressed protein                             29   4.5  
At2g33350.1 68415.m04088 hypothetical protein                          28   6.0  

>At4g35470.1 68417.m05041 leucine-rich repeat family protein similar
           to Leucine-rich repeat protein SHOC-2 (Ras-binding
           protein Sur-8) (SP:Q9UQ13 ){Homo sapiens},PIR:T12704;
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 549

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -3

Query: 642 ISARPVVSPSATTAERGTSCRTTPSLHGPEERRLRPRHYMKRAQACVSQS 493
           +S+RP + P+ TTA R  S     SL+  E   +RP+  + R  + V++S
Sbjct: 126 VSSRPPLPPATTTAARSDS---QSSLNFSERAPVRPKDMVSRDDSFVTKS 172


>At2g20890.1 68415.m02462 expressed protein
          Length = 300

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 255 LLICIVSVTIAVVPLSSSSNEINQLYKRKLPS 350
           L+ C+ +VT  V P+S + ++  + YKR +PS
Sbjct: 53  LIHCMSNVTADVPPVSETKSKFLKAYKRPIPS 84


>At2g33350.1 68415.m04088 hypothetical protein
          Length = 440

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 164 DSNSKTKIQLIFTSEESFIKHDKAEICFRASANMHSVRD 280
           D N+ T + +IF S+E F     A I F +S+  + V D
Sbjct: 118 DDNNNTDLSIIFDSQEDFENDITASIDFSSSSLQYPVID 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,167,570
Number of Sequences: 28952
Number of extensions: 311141
Number of successful extensions: 765
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)