Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0139
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.           24   1.1  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   1.1  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    24   1.1  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   4.4  

>S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.
          Length = 35

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 464 QQKTXNLKTCFLNLKQSFPTVESANNLSLVE 556
           +Q+T +L   F +L++S PT+ S + LS ++
Sbjct: 6   RQRTQSLNEAFASLRKSIPTMPS-DKLSKIQ 35


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 375 TXPINSSTLCATRTETGLLC 434
           T  INS T+C T +  G+ C
Sbjct: 146 TMEINSDTMCVTFSNLGIQC 165


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 464 QQKTXNLKTCFLNLKQSFPTVESANNLSLVE 556
           +Q+T +L   F +L++S PT+ S + LS ++
Sbjct: 106 RQRTQSLNEAFASLRKSIPTMPS-DKLSKIQ 135


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 471 FCWKQSGPXSAMNKAIRS 418
           FC +++G   A+NKAI++
Sbjct: 360 FCGEKNGLLKAVNKAIKN 377


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,556
Number of Sequences: 336
Number of extensions: 2472
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)