Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0139
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    30   1.5  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      30   1.5  
L23647-8|AAK29993.1|   54|Caenorhabditis elegans Hypothetical pr...    28   5.9  
L07144-2|AAK21439.1|   54|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 356 HIXDAQNXTNQLIDFVCYKDGDRIALFIAEXG 451
           ++ DA N T +LID    K+GD +A+ +A  G
Sbjct: 66  NVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 356 HIXDAQNXTNQLIDFVCYKDGDRIALFIAEXG 451
           ++ DA N T +LID    K+GD +A+ +A  G
Sbjct: 66  NVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 356 HIXDAQNXTNQLIDFVCYKDGDRIALFIAEXG 451
           ++ DA N T +LID    K+GD +A+ +A  G
Sbjct: 66  NVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>L23647-8|AAK29993.1|   54|Caenorhabditis elegans Hypothetical
           protein ZC262.5 protein.
          Length = 54

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +2

Query: 56  AAGVXADDFSXITAVVTSQCTKNNAEDKVPEVEAXLRT 169
           AAG+    +S I A V  QCTK  A  K P  +A L+T
Sbjct: 6   AAGLNYVRYSQIAAQVVRQCTKGGANVKKP--QATLKT 41


>L07144-2|AAK21439.1|   54|Caenorhabditis elegans Hypothetical
           protein R05D3.6 protein.
          Length = 54

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +2

Query: 56  AAGVXADDFSXITAVVTSQCTKNNAEDKVPEVEAXLRT 169
           AAG+    +S I A V  QCTK  A  K P  +A L+T
Sbjct: 6   AAGLNYVRYSQIAAQVVRQCTKGGANVKKP--QATLKT 41


>U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical
           protein T19D2.1 protein.
          Length = 872

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +3

Query: 324 CVLX*ATNMRTTSXMPKTXPINSSTLCATRTETGLLCSSRXAALTASSKRLXI 482
           C++  +TN+RT S  P   P      C       LLC S   A + +   L +
Sbjct: 550 CLISGSTNIRTVSNFPDGAPCGPGQYCIKGECRPLLCGSTTLAYSEADCPLSV 602


>AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.4 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 143 PEVEAXLRTFGNCLKGLVDLNVLKTEIEEAKPN 241
           PE E  +RT G+   G++D+N  +   + A+PN
Sbjct: 64  PEFEVEIRTNGHIYAGILDINGAEPGDKGAEPN 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,395,146
Number of Sequences: 27780
Number of extensions: 256235
Number of successful extensions: 597
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)