Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0139
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15830.1 68417.m02408 expressed protein                             29   3.1  
At5g17330.1 68418.m02030 glutamate decarboxylase 1 (GAD 1) sp|Q4...    28   7.2  
At5g12370.1 68418.m01455 exocyst complex component Sec10-related...    28   7.2  
At1g24610.1 68414.m03096 SET domain-containing protein low simil...    27   9.5  

>At4g15830.1 68417.m02408 expressed protein
          Length = 296

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 98  VVTSQCTKNNAEDKVPEVEAXLRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCD 277
           ++ +Q   +   DK+PE     R+  N L      N      EE    G+  E +KK+C+
Sbjct: 225 ILLAQMAADQLSDKLPEAREAARSMVNSLFEKFTWN------EEEDEEGSKQEAWKKFCE 278

Query: 278 KS 283
           K+
Sbjct: 279 KN 280


>At5g17330.1 68418.m02030 glutamate decarboxylase 1 (GAD 1)
           sp|Q42521
          Length = 502

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 647 LIKFMRKDSSCHTALPXTD*LHR 715
           L+ F  KDSSCHT    +D L R
Sbjct: 375 LVAFSLKDSSCHTEFEISDMLRR 397


>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
           low similarity to SP|O00471 Exocyst complex component
           Sec10 (hSec10) {Homo sapiens}
          Length = 858

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
 Frame = +2

Query: 143 PEVEAXLRTFGNCLKGLVD--------LNVLKTEI--EEAKPNGALDEVFKKYCDKSAQL 292
           PEV+  L  F +  K LVD        LN LK E+  +++K    L E      +  A+L
Sbjct: 87  PEVDGLLSLFKDACKELVDLRKQVDGRLNTLKKEVSTQDSKHRKTLTEGVDGLFESFARL 146

Query: 293 KGCIXSXLXGVRPXVGNEYANHIXDAQNXT-NQLIDFVCY 409
            G I S +      +G+   +   DAQ  T +Q ID + Y
Sbjct: 147 DGRI-SSVGQTAAKIGDHLQS--ADAQRETASQTIDLIKY 183


>At1g24610.1 68414.m03096 SET domain-containing protein low
           similarity to SP|Q43088 Ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (EC 2.1.1.127)
           {Pisum sativum}; contains Pfam profile PF00856: SET
           domain
          Length = 476

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 255 SSSAPFGLASSISVFRT 205
           S+ APFG+A+ I+VFRT
Sbjct: 392 SAVAPFGIANEIAVFRT 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,541,065
Number of Sequences: 28952
Number of extensions: 238067
Number of successful extensions: 538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)