Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0138
         (809 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    24   1.2  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    24   1.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.8  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
 Frame = +3

Query: 390 HFSFHTNSLC-----YEFFITAVCVMY**TILCIWHYWHFGSG-DAYYCVIVNPTLVYIR 551
           HFSF +  LC     Y F+++ +   Y   +  I+ Y    +G   +  ++ +  + Y R
Sbjct: 72  HFSFMSRFLCLPFYSYFFYLSYIYTTYSRKLSGIFKYIDQMAGYTGFLAMLTSMVMFYKR 131

Query: 552 MHSLEKLYSHYKQI 593
            + L+ L S+ + I
Sbjct: 132 SNDLKTLLSNLESI 145


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
 Frame = +3

Query: 390 HFSFHTNSLC-----YEFFITAVCVMY**TILCIWHYWHFGSG-DAYYCVIVNPTLVYIR 551
           HFSF +  LC     Y F+++ +   Y   +  I+ Y    +G   +  ++ +  + Y R
Sbjct: 28  HFSFMSRFLCLPFYSYFFYLSYIYTTYSRKLSGIFKYIDQMAGYTGFLAMLTSMVMFYKR 87

Query: 552 MHSLEKLYSHYKQI 593
            + L+ L S+ + I
Sbjct: 88  SNDLKTLLSNLESI 101


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 1   FSFHTNSLCYEFFIT 45
           F+FH  +L Y F+I+
Sbjct: 172 FTFHKKNLYYSFYIS 186



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 132 FSFHTNSLCYEFFIT 176
           F+FH  +L Y F+I+
Sbjct: 172 FTFHKKNLYYSFYIS 186



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 393 FSFHTNSLCYEFFIT 437
           F+FH  +L Y F+I+
Sbjct: 172 FTFHKKNLYYSFYIS 186


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 303 NGCLCDVLMHYIMHLALSAL 362
           +GCLC++ M ++  L  S L
Sbjct: 313 SGCLCELYMAFMDRLYFSNL 332


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,111
Number of Sequences: 336
Number of extensions: 5174
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)