Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0138
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    28   1.4  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   3.2  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    26   7.3  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   7.3  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/68 (26%), Positives = 28/68 (41%)
 Frame = -2

Query: 496 PKCQ*CQMHNIVHQYITQTAVIKNS*HSEFVWNEK*HNNTHPHYQSADSAKCII*CIRTS 317
           P C  C  HNI   Y + +    +S H E    ++ H N    +Q  + A   I  +   
Sbjct: 87  PSCDQCLKHNIPCIYKSNSTKRSHSRHEEIHHQQQLHLNHQYQHQHKNVAANSIDNLSRQ 146

Query: 316 HKQPLSLN 293
           + QP  +N
Sbjct: 147 YSQPNHIN 154


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -2

Query: 313 KQPLSLNHNIASLCGMKNDTRIRIPLPKCQ*CQMHNIVHQDITQTAVIKN 164
           K P+ + + +A+LC  + D+ +R  +     C +  ++HQ  T+T  ++N
Sbjct: 431 KVPIDIRNEMAALCFSQIDSYVRFSIL----CSLLALLHQIATRTQELEN 476


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 211 HNIVHQDITQTAVIKNS 161
           HNI+H+D+  T V+ NS
Sbjct: 435 HNIIHRDVKPTNVLVNS 451


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 248 THPTTKVPVVPNA*YSSSGHHT 183
           T PTT VP+VP A + S+   T
Sbjct: 713 TSPTTNVPIVPEAVHLSTAFST 734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,426
Number of Sequences: 5004
Number of extensions: 75194
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)