Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0138
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0101 - 766382-767487,767599-767756,767900-768615                 30   2.5  
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    29   3.3  

>01_01_0101 - 766382-767487,767599-767756,767900-768615
          Length = 659

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 467 IMHLALLALW*WGCVLLCHRESDSCIYSYAFIRKAVFTLQ 586
           I ++A++  + W C LL  R  ++ IY+Y  +  A+  L+
Sbjct: 249 IANIAIIDFYFWSCFLLGDRSHNNLIYTYMVVDTALLILK 288


>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 300 DNGCLCDVLMHYIMHLALSALW*WGCVL--LCHFSFHTNSLCYEFFITAVCVMY 455
           D+  +  V ++ ++ L ++ +W +GC+L   CHF    + L  E F T    +Y
Sbjct: 655 DDDNVTPVSLNKLVSLTIAEIWLYGCLLRFRCHFFTMVDDLSNEDFNTLFAQLY 708


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,650,784
Number of Sequences: 37544
Number of extensions: 413413
Number of successful extensions: 646
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)