Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0138
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3435| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)                  29   4.5  
SB_59683| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)                 29   4.5  
SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)                 29   5.9  
SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)               29   5.9  

>SB_3435| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)
          Length = 314

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +3

Query: 57  DVLMNYIMHLALLALW*WGCVLLCHFSFHTNSLCYEFFITAVCVMS**TILCIWHYWHFG 236
           +V+ N+ + + L+ +W +  V      F+ N+    FF TA+ +    TI C      FG
Sbjct: 145 EVVTNFRICIVLVVIWIFAAVFTILRMFYPNTAINAFFTTAILIGFAVTIFC------FG 198

Query: 237 SGMRIL 254
             +RI+
Sbjct: 199 QTLRIV 204


>SB_59683| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)
          Length = 325

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +3

Query: 57  DVLMNYIMHLALLALW*WGCVLLCHFSFHTNSLCYEFFITAVCVMS**TILCIWHYWHFG 236
           +V+ N+ + + L+ +W +  V      F+ N+    FF TA+ +    TI C      FG
Sbjct: 156 EVVTNFRICIVLVVIWIFAAVFTILRMFYPNTAINAFFTTAILIGFAVTIFC------FG 209

Query: 237 SGMRIL 254
             +RI+
Sbjct: 210 QTLRIV 215


>SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)
          Length = 385

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 465 ILCIWHYWHFGSGD-AYYCVIVNPTLVYIRMHSLEKLYSHYKQILKFYLYIPNMXLIYFQ 641
           +LC++ +     GD A Y V V  TL   R+   +   S+Y  +L F + I       FQ
Sbjct: 138 VLCLYLF-----GDLAIYAVSVATTLT--RVLGSQPEISYYSFLLGFIMVIGPFCFFNFQ 190

Query: 642 KTK*EXIXVLQN*TIIIRN 698
           KTK     VLQ  T+++RN
Sbjct: 191 KTK-----VLQLSTMVLRN 204


>SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)
          Length = 704

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 328 IRTSHKQPLSLNHNIASLCGMKNDTRIR 245
           +  S KQP   NHNI  L  +KN+  ++
Sbjct: 537 VEASKKQPFDKNHNIRHLSDIKNNAELQ 564


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,972,248
Number of Sequences: 59808
Number of extensions: 527582
Number of successful extensions: 1013
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)