Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0136
         (726 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RKF4 Cluster: UDP-n-acetylglucosamine pyrophosphoryla...    34   3.1  
UniRef50_Q83DA5 Cluster: ABC transporter, ATP-binding/permease p...    34   4.1  
UniRef50_Q5CWM7 Cluster: Large protein with ARM repeats; n=4; Cr...    34   4.1  
UniRef50_Q6FKG2 Cluster: Candida glabrata strain CBS138 chromoso...    34   4.1  
UniRef50_A6E8B5 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_Q7RKF4 Cluster: UDP-n-acetylglucosamine pyrophosphorylase;
           n=4; Plasmodium (Vinckeia)|Rep: UDP-n-acetylglucosamine
           pyrophosphorylase - Plasmodium yoelii yoelii
          Length = 574

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -2

Query: 185 VKSDNVYILGYVYCSRYFNKNDIFEAVSY*R*VIFYETCCSNR---LL*NKNGTCYEKSR 15
           V ++N+     VYC  YF    IF+   Y + ++ YE CC N    +  N NG     ++
Sbjct: 454 VSNNNILTKSKVYCYEYF----IFDIFKYAKKILAYEVCCDNEFNPIKSNNNGDSILSAK 509

Query: 14  VRL 6
           + L
Sbjct: 510 ISL 512


>UniRef50_Q83DA5 Cluster: ABC transporter, ATP-binding/permease
           protein; n=4; Coxiella burnetii|Rep: ABC transporter,
           ATP-binding/permease protein - Coxiella burnetii
          Length = 601

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -1

Query: 606 YQSLFKDCTKNAAKTAITILPVTPTMIFLFLRFLVSDVSTFSLVCNAISIEFKIVVSSLN 427
           YQ   +  T   +K  +T +  T  +I   L  +   +  FSL C  + ++FKIV+ S+ 
Sbjct: 125 YQKAMEFNTSTLSKYILTDVVYTVNVITFILSIVTDSIVVFSLACLILWVDFKIVLLSVV 184

Query: 426 TACAI 412
           +  A+
Sbjct: 185 SLTAL 189


>UniRef50_Q5CWM7 Cluster: Large protein with ARM repeats; n=4;
            Cryptosporidium|Rep: Large protein with ARM repeats -
            Cryptosporidium parvum Iowa II
          Length = 2558

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +2

Query: 395  DQYASNMAQAVLSELTTILNSM--EIALHTRLKVLTSDTKKRKNKKIIVGVTGSIVIAVL 568
            D Y     QA+ +++  I N+M  +I     LKV+    K+R+ + + + +T S  +A  
Sbjct: 1621 DYYGDEFGQALKAKVEEITNTMASDIPAELSLKVVYDMLKRREAEGLSLSITESTAVAEK 1680

Query: 569  AAFFVQSLKRL 601
              + VQ++ +L
Sbjct: 1681 LEYLVQTMSQL 1691


>UniRef50_Q6FKG2 Cluster: Candida glabrata strain CBS138 chromosome
           L complete sequence; n=1; Candida glabrata|Rep: Candida
           glabrata strain CBS138 chromosome L complete sequence -
           Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 847

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +2

Query: 359 KTKNITDCLIYRDQYASNMAQAVLSELTTILNSMEIALHTRLKVLTSDTKKRKNKKIIVG 538
           +  N+TD   Y D Y S  +    + +T+ ++SM +   T +  LT  TK   N      
Sbjct: 331 ENSNLTDSYQYSDPYISRNSNMSNASITSFISSMNVGNSTNITPLTESTKVDTNDNFNAL 390

Query: 539 VTGSI 553
           + G I
Sbjct: 391 MKGHI 395


>UniRef50_A6E8B5 Cluster: Putative uncharacterized protein; n=1;
           Pedobacter sp. BAL39|Rep: Putative uncharacterized
           protein - Pedobacter sp. BAL39
          Length = 131

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = -1

Query: 534 TMIFLFLRFLVSDVSTFSLVCNAISIEFKIVVSSLNTACAIFEAY*SRYIKQSVIFLVFF 355
           T  +L   FL+S  +   ++ N +SI   I ++   +   +FE   SRY K+   F+ F 
Sbjct: 24  TFEYLSFNFLISTFTIRYIIANVVSIVLAITINYWLSRAYVFEK--SRYSKRDE-FISFV 80

Query: 354 KANVLAIIL 328
             ++LAI+L
Sbjct: 81  IFSILAIVL 89


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 672,088,284
Number of Sequences: 1657284
Number of extensions: 13164155
Number of successful extensions: 29254
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29250
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)