Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0136
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   4.8  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   6.3  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    25   8.3  

>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 388 YQTVCNILSFLQS*RVGHYTQVYSVQVLRAC--FQYISNFSWNNTKIISRQY 239
           Y     + + +   + G  T VY++ +L AC  F+ ++ F    +KI+  ++
Sbjct: 173 YDVFSTLYTVILKRKFGFETAVYAIGLLSACDKFETVNTFRLGLSKIVDEEF 224


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 266  IPTEIADILEASSEHLYRIY 325
            +PTEIAD+L+A  + +  +Y
Sbjct: 1480 LPTEIADVLDAHDQRVLDLY 1499


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 321 ILYRCSELASNISAISVGIIPKSFL 247
           +L+RC    S+I   SVG+I   FL
Sbjct: 272 VLFRCQNQTSSIDVWSVGVILLCFL 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,556
Number of Sequences: 5004
Number of extensions: 61713
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)