Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0136
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0476 - 3896314-3898725                                           31   1.2  
06_03_0470 - 21113186-21114183,21114273-21115824                       28   8.7  
05_01_0478 - 3910575-3912989                                           28   8.7  

>05_01_0476 - 3896314-3898725
          Length = 803

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +2

Query: 452 NSMEIALHTRLKVLTSDTKKRKNKKIIVGVTGSIVIAVLAAFFVQSLKRL**ISMLLIDP 631
           NS E  L+ RL      + ++ N+K IVGV   I+   +A+F V  +     + +L++  
Sbjct: 435 NSSEEVLYLRLSAKDVPSSRKNNRKTIVGV---IIATCIASFLVMLM-----LILLILRK 486

Query: 632 RYQHTAQ 652
           +  HT+Q
Sbjct: 487 KCLHTSQ 493


>06_03_0470 - 21113186-21114183,21114273-21115824
          Length = 849

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -1

Query: 591 KDCTKNAAKTAITILPVTPTMIFLFLRFLVSDVSTFSL-VCNAISIEFKIVVSSLN 427
           K+CT   A  A T+L V  +  F+FL  L++D+  ++   C A+    + VV++++
Sbjct: 548 KECTGVEAIGAQTMLEVFQSFEFVFLLHLMNDIFGYTADFCQALQKREQDVVNAMD 603


>05_01_0478 - 3910575-3912989
          Length = 804

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +2

Query: 452 NSMEIALHTRLKVLTSDTKKRKNKKIIVGVTGSIVIAVLAAFFVQSLKRL**ISMLLIDP 631
           NS E  L+ RL      + ++ N+K IVGV   I  A +  F V  +     + +L++  
Sbjct: 435 NSSEDVLYLRLSTKDVPSSRKNNRKTIVGV---IAAACIVCFLVMLM-----LILLILKK 486

Query: 632 RYQHTAQ 652
           +  H +Q
Sbjct: 487 KLLHASQ 493


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,954,924
Number of Sequences: 37544
Number of extensions: 323554
Number of successful extensions: 627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)