Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0136
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30692| Best HMM Match : REV (HMM E-Value=3.8)                       31   1.3  
SB_30545| Best HMM Match : Phage_integrase (HMM E-Value=0.1)           29   2.9  
SB_27123| Best HMM Match : FecCD (HMM E-Value=0.12)                    28   8.9  

>SB_30692| Best HMM Match : REV (HMM E-Value=3.8)
          Length = 485

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +2

Query: 254 DFGIIPTEIADILEASSEHLYRIYLSIMANTLALKKTKNITDCLIYRDQYASNMAQAVLS 433
           DFG  P  + D+LEA  E   +   S+  + L L     I + L   D+  S  + ++++
Sbjct: 223 DFGECPVWLTDLLEADDE---KTVPSVTTDELPLPDPNAIEELLALMDEVKSPASDSLIA 279

Query: 434 ELTTILNSME 463
             T  L+++E
Sbjct: 280 RETNDLSTLE 289


>SB_30545| Best HMM Match : Phage_integrase (HMM E-Value=0.1)
          Length = 311

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 597 LFKDCTKNAAKTAITILPVTPTMIFLFLRFL 505
           LF+    +   TA   LP++PTM+ LFL +L
Sbjct: 32  LFRQFLDDTFNTAQVSLPISPTMLALFLAYL 62


>SB_27123| Best HMM Match : FecCD (HMM E-Value=0.12)
          Length = 587

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/82 (23%), Positives = 34/82 (41%)
 Frame = -1

Query: 531 MIFLFLRFLVSDVSTFSLVCNAISIEFKIVVSSLNTACAIFEAY*SRYIKQSVIFLVFFK 352
           M F  + F+   +   +  C    +   I+++ + T C         Y+   V  +VF  
Sbjct: 195 MSFFVVLFIEGGLFAMATSCLVAGLIVPIMIACVVTCCV--------YLMHCVRNVVFII 246

Query: 351 ANVLAIILKYILYRCSELASNI 286
            N+ A I  YI+ RC  +  N+
Sbjct: 247 INIPANIYAYIIRRCLAIVENL 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,678,897
Number of Sequences: 59808
Number of extensions: 408173
Number of successful extensions: 833
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)