Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0136
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.24 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.0  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 546 PVTPTMIFLFLRFLVSDVSTFSLVCNAISIEFKIVVSSLNTACAIFE 406
           P+    +F  +  L SDV TF+ +C+ I+     VVS LN   ++F+
Sbjct: 413 PIDTCEMFDSVSILFSDVVTFTEICSRITP--MEVVSMLNAMYSLFD 457


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 612 VCYLLTHAISIRPSN 656
           +CYL+T A+ +RP++
Sbjct: 704 LCYLVTFALVLRPTD 718


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 300  LASNISAISVGIIPKSFLDNT*EGFMSPIFRSPSNGQIGKIRQ 172
            LAS I  +S G I      +  +G    I +SPS+ Q  +I+Q
Sbjct: 1021 LASQIKLVSPGQIKSLLTGHGLQGQTIFIKQSPSSNQSQQIQQ 1063


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 552 ILPVTPTMIFLFLRFLVSDVST 487
           +LP+T     +F+  LV +VST
Sbjct: 53  VLPITVIYAVIFVTGLVGNVST 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,905
Number of Sequences: 438
Number of extensions: 4115
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)