Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0135
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0070 - 8004397-8004645,8004796-8004961,8005039-8005793           28   5.4  
02_04_0350 + 22234632-22235145,22235277-22236209,22237253-222373...    28   5.4  
07_03_1406 + 26343915-26346032                                         27   7.2  
05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884     27   7.2  
02_05_0378 - 28438918-28439064,28439280-28439313,28439859-284399...    27   9.5  
02_04_0061 + 19361562-19363130                                         27   9.5  

>11_02_0070 - 8004397-8004645,8004796-8004961,8005039-8005793
          Length = 389

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 114 VGDGGSVTTTPRQSXVCWSAGCA 46
           VGD G VT + R     W+A CA
Sbjct: 39  VGDDGGVTDSARAFEAAWAAACA 61


>02_04_0350 +
           22234632-22235145,22235277-22236209,22237253-22237340,
           22237859-22237865
          Length = 513

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 102 GSVTTTPRQSXVCWSAGCAACRRGWIWIRR 13
           GS+TT      V ++ G A C  G++WI R
Sbjct: 305 GSITTMSNDELVEFAWGLANCGHGFLWIVR 334


>07_03_1406 + 26343915-26346032
          Length = 705

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 13  PSDPNPTSPARGAPCRPTNXALARRGRH 96
           P  P   SPA  + C P   A ARRG H
Sbjct: 20  PRLPPLASPATTSTCAPAPAATARRGSH 47


>05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884
          Length = 271

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 58  RPTNXALARRGRHGTTVAYIVDDSGS 135
           RP+  A  RR RHGT VAY+  +  S
Sbjct: 22  RPSPSAPNRRRRHGTVVAYMEPNPNS 47


>02_05_0378 -
           28438918-28439064,28439280-28439313,28439859-28439963,
           28440402-28441558
          Length = 480

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 138 VGARVVYDVGDGGSVTTTPRQSXVCWSAGCAACRRGWIWIRRY 10
           V A +   VGD        R+S +   +   A RRG  W+RRY
Sbjct: 436 VVAEIGERVGDPRGTGLQERRSLMAVGSWIGAKRRGGYWLRRY 478


>02_04_0061 + 19361562-19363130
          Length = 522

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 108 DGGSVTTTPRQSXVCWSAGCAA 43
           DG  V T P  + V WSAG AA
Sbjct: 109 DGDLVLTDPAANKVLWSAGAAA 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,448,915
Number of Sequences: 37544
Number of extensions: 218848
Number of successful extensions: 513
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)