Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0133
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    28   1.3  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    28   1.3  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    26   5.0  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    26   6.7  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   6.7  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   8.8  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.8  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 468 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPER 587
           I R S H R+  G +R Q R+K      R  S    GP+R
Sbjct: 3   ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 468 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPER 587
           I R S H R+  G +R Q R+K      R  S    GP+R
Sbjct: 3   ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 611 LFSASWVPSLWSLISLR 561
           L+S+SW+P+L  L+S R
Sbjct: 285 LYSSSWIPTLHDLVSTR 301


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 178 ACPVLSEDYFRPWRQLAAAS 237
           +CP+ +EDY++ + Q+ AAS
Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +2

Query: 404 SSSDVTRCLXARRLRLWNRGCHQTGFSPSPRRGRYPT 514
           SS   TR     R     RGC  T   P PR G   T
Sbjct: 319 SSKGPTRLYEVARFNCTTRGCEYTQNIPCPRAGHSHT 355


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 184 PVLSEDYFRPWRQLAAASRDLGSSIKADKDKFQVNL 291
           P  SED   P + L  A  ++   +K+D ++F+V++
Sbjct: 439 PTSSEDNLHPLQPLTTADEEMDLDLKSD-ERFKVDI 473


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 179 PVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSI 289
           PVQ SP  TSD+ D  +L+  +      P    S+SI
Sbjct: 622 PVQVSPLFTSDKNDPLQLNPQSDDSTSSPKHGKSRSI 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,625
Number of Sequences: 5004
Number of extensions: 58250
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)