Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0131
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   3.6  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   3.6  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   3.6  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   8.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.3  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 57  QRQPQSHQNSQHVPTNQDSTRRHHHQA 137
           QRQ    QN+ +  TN    + HHH A
Sbjct: 303 QRQAAQQQNNNNAATN---NQNHHHHA 326


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 236 EASLLSIHQEQVQPLVEPRPQHQNLLPP 319
           EA + ++    V P     P  QN+LPP
Sbjct: 407 EAPIPNVSPHYVTPTPPEAPLFQNVLPP 434


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 92  RPHKPGFYAPSSPP 133
           RPH P  Y P  PP
Sbjct: 22  RPHSPEPYPPRCPP 35


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 40  SXIHIHNDNHKATRTHNTSPQTRILRAVIT 129
           S  HI   +++  R H++   TR +R  IT
Sbjct: 135 SYFHIATTSNEFIRVHHSGSITRSIRLTIT 164


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 226 AQDRSLIAFHPSRTGSAFGRTKTSTPKSSAAIRSQNL 336
           A+ + L++ HP    S    T +  P+     R +NL
Sbjct: 208 AKRKQLVSEHPDSPNSKKSATPSPPPQLEVNERKENL 244


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 155 HYWQRFILLPLEQATQYTVIRP 220
           H++  F L PL+      V+RP
Sbjct: 311 HFYCAFSLYPLKSTFYLNVVRP 332


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,709
Number of Sequences: 336
Number of extensions: 3914
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)