Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0131
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 34 0.14
11_01_0389 - 2937242-2939476,2939556-2939666,2941254-2941450,294... 30 1.8
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 29 5.4
04_04_1388 - 33179270-33180679 29 5.4
03_06_0753 + 36015026-36015256,36015780-36015885,36016132-360161... 29 5.4
09_02_0540 + 10410372-10411331 28 7.2
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 28 7.2
02_01_0382 - 2772378-2773544 28 7.2
05_07_0242 + 28615573-28616304 28 9.5
02_01_0667 - 4958924-4959523 28 9.5
>01_05_0687 + 24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/79 (29%), Positives = 31/79 (39%)
Frame = +2
Query: 116 APSSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEPKTEASLLSIHQEQVQPLVEPRP 295
AP SP F Y +LLP Q T +R + TE + Q+ VE
Sbjct: 1091 APCSPDRAPPGFETYKSSQLLLPSPSLAQTTNVRQDQSVTEPVSVIEEAPQLLHSVEVMG 1150
Query: 296 QHQNLLPPYEVKISSRSDG 352
H + +PP S +DG
Sbjct: 1151 VHMDAVPPLLPSSESGADG 1169
>11_01_0389 -
2937242-2939476,2939556-2939666,2941254-2941450,
2941543-2941633
Length = 877
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 164 QRFILLPLEQATQYTVI--RPQEPKTEASLLSIHQEQVQPLVEPRPQHQN 307
++ +LLP Q Q + RP P+T LL ++ P+V P P QN
Sbjct: 104 EKVMLLPFSQDVQKFICIKRPTLPETSFELLREVYPEITPVVLPSPVEQN 153
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Frame = +2
Query: 164 QRFILLPLEQATQYTVI--RPQEPKTEASLLSIHQEQVQPLVEPRPQHQNLLPPYE---- 325
++ +L P Q Q + RP P+T LL ++ P+V P P QN ++
Sbjct: 117 EKDMLPPFRQDIQKFICIKRPTLPETSFELLRKVYPEITPVVPPSPVEQNGNDQHDNISH 176
Query: 326 VKISSRSDGFVID-EDLTDDSLQYLTDD 406
+++ GF D L D L L D+
Sbjct: 177 DLVNTEKTGFTTDGAQLQQDDLANLVDE 204
>04_04_1388 - 33179270-33180679
Length = 469
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 209 VIRPQEPKTEASLLSIHQEQVQPLVEPRPQHQNL 310
V P A LL+ H + V+PLV P P H +L
Sbjct: 41 VTTPGNAAQLAPLLAAHPDSVRPLVLPFPSHPSL 74
>03_06_0753 +
36015026-36015256,36015780-36015885,36016132-36016192,
36016278-36016573,36016654-36016793,36016880-36016954,
36017044-36017134,36017677-36017880,36018409-36018453,
36018745-36018830
Length = 444
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 48 PYPQRQPQS-HQNSQHVPTNQDSTRRHHH 131
P Q QP+ HQ S H ++D+ ++HHH
Sbjct: 58 PSNQNQPKKGHQRSHHA-VDKDAAKKHHH 85
>09_02_0540 + 10410372-10411331
Length = 319
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
Frame = -1
Query: 705 TAVSTFHPSWIGP--FSTAHV 649
+AVS F+P+WI P STAHV
Sbjct: 38 SAVSPFYPAWITPLLLSTAHV 58
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 166 TIYPATT*TSDSVHCHQTARAQDRSLIAFHPSRTGSAFGRTKTSTPKSSAA 318
T P+T S S C T Q R L+A S GS+ RT+++ P SSA+
Sbjct: 402 TTLPSTPSPSSSPQCFST---QTRPLVA--SSNYGSSTRRTRSTPPTSSAS 447
>02_01_0382 - 2772378-2773544
Length = 388
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = +3
Query: 48 PYPQRQPQSHQNSQHV--PTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLS----TL 209
P P R P+S P++ +++RRHH Q + ++ H + LS T+
Sbjct: 15 PSPSRLPRSASGKAPTSPPSSSNASRRHHQQPPRASASTPATPAPSRHHLRSLSISCMTI 74
Query: 210 SSDRKSP 230
+D SP
Sbjct: 75 RTDDDSP 81
>05_07_0242 + 28615573-28616304
Length = 243
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/65 (26%), Positives = 25/65 (38%)
Frame = +2
Query: 188 EQATQYTVIRPQEPKTEASLLSIHQEQVQPLVEPRPQHQNLLPPYEVKISSRSDGFVIDE 367
+Q Q ++ P P LL QP P PQH L PP+ + G E
Sbjct: 84 QQQQQLRLLIPSPPTPRVPLL---MPPPQPQPHPHPQHPYLHPPFPYHHTPSGSGGTTTE 140
Query: 368 DLTDD 382
+++
Sbjct: 141 SSSEE 145
>02_01_0667 - 4958924-4959523
Length = 199
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/87 (21%), Positives = 34/87 (39%)
Frame = +2
Query: 119 PSSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEPKTEASLLSIHQEQVQPLVEPRPQ 298
P S P + +H+ + P A RP +++ S +P++ PRP
Sbjct: 72 PLSLPHAQPQLHHHHHHHLTYP---AAAVVAARPATSSLSSTVESFGTRP-RPVLPPRPP 127
Query: 299 HQNLLPPYEVKISSRSDGFVIDEDLTD 379
+P + + S V+D+D D
Sbjct: 128 PPPPIPDGDCRSDCGSSASVVDDDCAD 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,342,537
Number of Sequences: 37544
Number of extensions: 456421
Number of successful extensions: 1542
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1540
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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