Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0131
(774 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 31 0.91
Z46266-12|CAA86415.1| 1259|Caenorhabditis elegans Hypothetical p... 29 4.9
Z37979-3|CAA86033.1| 1259|Caenorhabditis elegans Hypothetical pr... 29 4.9
U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated p... 29 4.9
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 29 4.9
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 29 4.9
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 29 4.9
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 29 4.9
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q... 29 4.9
AB011279-1|BAA24959.1| 594|Caenorhabditis elegans GAP-2-3 protein. 29 4.9
Z46266-13|CAA86418.1| 1137|Caenorhabditis elegans Hypothetical p... 28 6.4
Z37979-4|CAA86036.1| 1137|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical ... 28 6.4
AB011280-1|BAA24960.1| 1120|Caenorhabditis elegans GAP-2-4 protein. 28 6.4
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical pr... 28 8.5
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 28 8.5
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 28 8.5
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 28 8.5
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 45 HP--YPQRQPQSHQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSD 218
HP + Q PQ HQ QH +++ HH Q Q + + +HL ++ S +
Sbjct: 1170 HPQMHMQMLPQHHQQQQH---HEEMMMMHHQQQQQLQQQQQMHQMPLHHLPQQPPPPSQN 1226
Query: 219 RKSPRQKP 242
++P +P
Sbjct: 1227 PQNPLPQP 1234
>Z46266-12|CAA86415.1| 1259|Caenorhabditis elegans Hypothetical
protein ZK899.8c protein.
Length = 1259
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 21 SKWTM*LXHPYPQR-QPQSHQNSQHVPTNQDSTRRHHHQASQTDSTITGNDL--SCYHLN 191
S+ M P PQ QPQ++ +S+HV Q +RR + + ++ L SC HL+
Sbjct: 119 SRENMHTPSPIPQEYQPQANYSSRHVHFAQSQSRRPFQRDQRNENASIRKRLSRSCDHLS 178
>Z37979-3|CAA86033.1| 1259|Caenorhabditis elegans Hypothetical
protein ZK899.8c protein.
Length = 1259
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 21 SKWTM*LXHPYPQR-QPQSHQNSQHVPTNQDSTRRHHHQASQTDSTITGNDL--SCYHLN 191
S+ M P PQ QPQ++ +S+HV Q +RR + + ++ L SC HL+
Sbjct: 119 SRENMHTPSPIPQEYQPQANYSSRHVHFAQSQSRRPFQRDQRNENASIRKRLSRSCDHLS 178
>U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated
protein 2, isoform d protein.
Length = 286
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 57 QRQPQSHQNSQHVPTNQDSTRRHHHQASQT 146
Q+QP Q+SQH+ + T ++H+Q S++
Sbjct: 66 QQQPHHQQHSQHLQHSHHKTYQNHNQYSRS 95
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 57 QRQPQSHQNSQHVPTNQDSTRRHHHQASQT 146
Q+QP Q+SQH+ + T ++H+Q S++
Sbjct: 1706 QQQPHHQQHSQHLQHSHHKTYQNHNQYSRS 1735
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 57 QRQPQSHQNSQHVPTNQDSTRRHHHQASQT 146
Q+QP Q+SQH+ + T ++H+Q S++
Sbjct: 1807 QQQPHHQQHSQHLQHSHHKTYQNHNQYSRS 1836
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 39 LXHPYPQRQPQS---HQNSQHVPTNQDSTRRHHHQASQTDS 152
L P P QP+S +SQ + + T HHHQ+SQ S
Sbjct: 212 LMSPPPTHQPRSILKGYSSQQYYSQTNLTESHHHQSSQETS 252
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 57 QRQPQSHQNSQHVPTNQDSTRRHHHQASQT 146
Q+QP Q+SQH+ + T ++H+Q S++
Sbjct: 1807 QQQPHHQQHSQHLQHSHHKTYQNHNQYSRS 1836
>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform a protein.
Length = 1128
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/69 (30%), Positives = 28/69 (40%)
Frame = +2
Query: 122 SSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEPKTEASLLSIHQEQVQPLVEPRPQH 301
SS PSV Y ++ LP+ A Q T Q P+T Q Q Q + + Q
Sbjct: 499 SSQPSVVQAGQTYPANYMTLPMNAAAQMTQSYIQHPQTPHDYYMQQQMQQQQQQQAQAQ- 557
Query: 302 QNLLPPYEV 328
N P +V
Sbjct: 558 SNYASPSQV 566
>AB011279-1|BAA24959.1| 594|Caenorhabditis elegans GAP-2-3 protein.
Length = 594
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 21 SKWTM*LXHPYPQR-QPQSHQNSQHVPTNQDSTRRHHHQASQTDSTITGNDL--SCYHLN 191
S+ M P PQ QPQ++ +S+HV Q +RR + + ++ L SC HL+
Sbjct: 119 SRENMHTPSPIPQEYQPQANYSSRHVHFAQSQSRRPFQRDQRNENASIRKRLSRSCDHLS 178
>Z46266-13|CAA86418.1| 1137|Caenorhabditis elegans Hypothetical
protein ZK899.8d protein.
Length = 1137
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 48 PYPQR-QPQSHQNSQHVPTNQDSTRRHHHQASQTDSTITGNDL--SCYHLN 191
P PQ QPQ++ +S+HV Q +RR + + ++ L SC HL+
Sbjct: 6 PIPQEYQPQANYSSRHVHFAQSQSRRPFQRDQRNENASIRKRLSRSCDHLS 56
>Z37979-4|CAA86036.1| 1137|Caenorhabditis elegans Hypothetical
protein ZK899.8d protein.
Length = 1137
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 48 PYPQR-QPQSHQNSQHVPTNQDSTRRHHHQASQTDSTITGNDL--SCYHLN 191
P PQ QPQ++ +S+HV Q +RR + + ++ L SC HL+
Sbjct: 6 PIPQEYQPQANYSSRHVHFAQSQSRRPFQRDQRNENASIRKRLSRSCDHLS 56
>AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical
protein Y67H2A.10 protein.
Length = 608
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 48 PYPQRQPQSHQNSQHVPTN-QDSTRRHHHQASQTDS 152
PYPQ+Q HQ QH P + Q ++ +Q S
Sbjct: 484 PYPQQQQMHHQMVQHSPHHYQQQQQQQQYQQQHQQS 519
>AB011280-1|BAA24960.1| 1120|Caenorhabditis elegans GAP-2-4 protein.
Length = 1120
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 48 PYPQR-QPQSHQNSQHVPTNQDSTRRHHHQASQTDSTITGNDL--SCYHLN 191
P PQ QPQ++ +S+HV Q +RR + + ++ L SC HL+
Sbjct: 6 PIPQEYQPQANYSSRHVHFAQSQSRRPFQRDQRNENASIRKRLSRSCDHLS 56
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
protein F29G6.3c protein.
Length = 1453
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 87 QHVPTNQDSTRRHHHQASQTDSTITGN 167
QH T+ D HHH S T T N
Sbjct: 355 QHSITHHDHDHHHHHHESHVTHTFTSN 381
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
protein F29G6.3b protein.
Length = 1785
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 87 QHVPTNQDSTRRHHHQASQTDSTITGN 167
QH T+ D HHH S T T N
Sbjct: 355 QHSITHHDHDHHHHHHESHVTHTFTSN 381
>Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical
protein F29G6.3a protein.
Length = 772
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 87 QHVPTNQDSTRRHHHQASQTDSTITGN 167
QH T+ D HHH S T T N
Sbjct: 355 QHSITHHDHDHHHHHHESHVTHTFTSN 381
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
protein F13B9.1c protein.
Length = 1609
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 45 HPYPQRQPQSHQNSQHVPTNQDSTRRHHHQASQ 143
H P PQ H N Q P Q + + HQ ++
Sbjct: 56 HQQPAAPPQQHTNPQQPPQQQYNVPTNSHQTAE 88
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
protein F13B9.1b protein.
Length = 1614
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 45 HPYPQRQPQSHQNSQHVPTNQDSTRRHHHQASQ 143
H P PQ H N Q P Q + + HQ ++
Sbjct: 56 HQQPAAPPQQHTNPQQPPQQQYNVPTNSHQTAE 88
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
protein F13B9.1a protein.
Length = 1632
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 45 HPYPQRQPQSHQNSQHVPTNQDSTRRHHHQASQ 143
H P PQ H N Q P Q + + HQ ++
Sbjct: 56 HQQPAAPPQQHTNPQQPPQQQYNVPTNSHQTAE 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,252,253
Number of Sequences: 27780
Number of extensions: 363039
Number of successful extensions: 1463
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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