Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0131
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.4  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          23   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.2  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   4.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 51   YPQRQPQSHQNSQHVPTNQD-STRRHHHQASQTD-STITGND 170
            YP+  P +H    H+P ++  S     ++A Q +   + G+D
Sbjct: 1474 YPRINPDNHNEKLHIPKDKSVSVLSRENEAGQKEVKVLLGSD 1515


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 468 SQTSTTLSSPGLRAILISSFTSSVKYCKLSSVRSSSITKPSDLL 337
           +  +TT+++P    I +S  T  +     SS   +SIT   D++
Sbjct: 833 TNVTTTINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVI 876


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 629 GIFKWGSTCAVENGPIQDGW-NVETAVTSTPTTEPR 733
           G+ KW   C V    +++ W +V+ +     +T  R
Sbjct: 49  GVNKWSKVCIVVRRKLEENWIHVDISFLPEKSTSSR 84


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 260 QEQVQPLVEPRPQHQNLLPPYEVKISSRSDGFVIDEDLTDDSLQYLTD 403
           Q+Q Q   + + Q +  L P E+K+    D F       D+S    TD
Sbjct: 165 QQQQQQQRQQQRQEERRLRPDEIKVEVGEDEFANGGAARDESKAGSTD 212


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 602 LARSHEXVSGIFKWGSTCAVENG 670
           LA S E ++ + K  S CA ENG
Sbjct: 16  LAVSEESINKLRKIESVCAEENG 38


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 40  SXIHIHNDNHKATRTHNTSPQTRILRAVIT 129
           S  HI   +++  R H++   TR +R  IT
Sbjct: 106 SYFHIATTSNEFIRIHHSGSITRSIRLTIT 135


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 40  SXIHIHNDNHKATRTHNTSPQTRILRAVIT 129
           S  HI   +++  R H++   TR +R  IT
Sbjct: 106 SYFHIATTSNEFIRIHHSGSITRSIRLTIT 135


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 40  SXIHIHNDNHKATRTHNTSPQTRILRAVIT 129
           S  HI   +++  R H++   TR +R  IT
Sbjct: 45  SYFHIATTSNEFIRIHHSGSITRSIRLTIT 74


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = +3

Query: 45  HPYPQRQPQSHQNSQHV--PTNQDSTRRHHHQASQT 146
           HP+    P  HQ+  H   PT       HHH  +Q+
Sbjct: 327 HPHRGSSPH-HQHGNHTMGPT-MGPPHHHHHHQTQS 360


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 45  HPYPQRQPQSHQNSQHVPTNQ 107
           HP  Q+Q Q HQ     P +Q
Sbjct: 222 HPRQQQQAQQHQGVVTSPLSQ 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,564
Number of Sequences: 438
Number of extensions: 3755
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)