Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0131
(774 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot... 32 0.37
At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containi... 30 2.0
At5g64840.1 68418.m08157 ABC transporter family protein 29 3.4
At5g19190.1 68418.m02285 expressed protein predicted protein, Ar... 29 3.4
At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related... 29 3.4
At2g35910.1 68415.m04408 zinc finger (C3HC4-type RING finger) fa... 29 3.4
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu... 29 4.5
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu... 29 4.5
At1g68830.1 68414.m07870 protein kinase family protein contains ... 29 4.5
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote... 29 4.5
At1g09390.1 68414.m01050 GDSL-motif lipase/hydrolase family prot... 29 4.5
At2g20880.1 68415.m02461 AP2 domain-containing transcription fac... 28 6.0
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 28 6.0
At1g03630.1 68414.m00343 protochlorophyllide reductase C, chloro... 28 6.0
At5g15430.1 68418.m01806 calmodulin-binding protein-related has ... 28 7.9
At3g27300.1 68416.m03412 glucose-6-phosphate 1-dehydrogenase / G... 28 7.9
At3g22380.1 68416.m02825 expressed protein 28 7.9
At3g01750.1 68416.m00112 ankyrin repeat family protein contains ... 28 7.9
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 28 7.9
At1g53165.1 68414.m06023 protein kinase, putative similar to ser... 28 7.9
>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 652
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3
Query: 57 QRQPQSHQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKSP 230
Q+Q Q QH +QD HH+ +++ S N S H +KR + S+D SP
Sbjct: 30 QQQQLQQQQQQHKNNHQDDDDHHHNNNNRSGSK---NPNSLNHRSKRRNPNSNDGDSP 84
>At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1141
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 18 PSKWTM*-LXHPYPQRQPQSHQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSC 179
PSK M L H + Q QSHQ+ Q + +Q + + Q Q D ++ ++C
Sbjct: 1044 PSKHHMSSLSHQFHQSIHQSHQHHQSIYQSQHAATHYPSQNHQCDPELSHTQMAC 1098
>At5g64840.1 68418.m08157 ABC transporter family protein
Length = 692
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 558 SRDAKRQRLSDFSGFSPEVMXALVESSNGGARAQLKMALSKM 683
S DAK +L GF+PE LV S +GG Q++M+L K+
Sbjct: 234 SVDAKISKLMPELGFAPEDADRLVASFSGG--WQMRMSLGKI 273
>At5g19190.1 68418.m02285 expressed protein predicted protein,
Arabidopsis thaliana
Length = 154
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 48 PYPQRQPQSHQNSQHVP-TNQDSTRRHHHQASQTDSTITGNDLSCYHLNKR 197
PY +Q QS +P ++Q R HHHQ S+ H N++
Sbjct: 57 PYMYQQEQSKGTGVFIPKSSQPRRRPHHHQKQGRYSSFNAKQQHSLHQNRQ 107
>At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related
protein (PAKRP1)
Length = 1292
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +2
Query: 242 SLLSIHQEQVQPLVEPRPQHQNLLPPYEVKISSRSDGFVIDEDLTDDSLQYLTDDVKELI 421
SLL I+ EQ+ L++ P +NL+ +VK V E+LT++ ++ LTD + LI
Sbjct: 225 SLLEIYNEQITDLLD--PSQKNLMIREDVKSG------VYVENLTEEYVKNLTDVSQLLI 276
Query: 422 K 424
K
Sbjct: 277 K 277
>At2g35910.1 68415.m04408 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 zinc finger
protein ATL6 [Arabidopsis thaliana] GI:4928403; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 217
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/73 (32%), Positives = 29/73 (39%)
Frame = +3
Query: 30 TM*LXHPYPQRQPQSHQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTL 209
T+ L Y R S SQ TNQDSTR HHH + G D ++ L
Sbjct: 80 TITLTSYYCTRNQLSSSPSQ---TNQDSTRIHHHHHHVIIDVVPGLDEDTIQSYPKI--L 134
Query: 210 SSDRKSPRQKPHC 248
S+ K P C
Sbjct: 135 YSEAKGPTTASCC 147
>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/63 (26%), Positives = 24/63 (38%)
Frame = +3
Query: 45 HPYPQRQPQSHQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRK 224
H P + PQS SQ P Q H H S + + + Y + R + + R
Sbjct: 52 HQQPHQHPQSQSQSQPQPHLQALPHPHSHSHSHSPLAAAASASAPYEVESR-TVVKVARS 110
Query: 225 SPR 233
PR
Sbjct: 111 EPR 113
>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/63 (26%), Positives = 24/63 (38%)
Frame = +3
Query: 45 HPYPQRQPQSHQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRK 224
H P + PQS SQ P Q H H S + + + Y + R + + R
Sbjct: 52 HQQPHQHPQSQSQSQPQPHLQALPHPHSHSHSHSPLAAAASASAPYEVESR-TVVKVARS 110
Query: 225 SPR 233
PR
Sbjct: 111 EPR 113
>At1g68830.1 68414.m07870 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 562
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 578 ETLRFQWFLARSHEXVSGIFKWGSTCAVENGPIQDGWNVETAVTSTPTTEPRK 736
+ LR Q+F A + + S W +NG +DG ET + EPRK
Sbjct: 464 QNLRMQYFRA-TQQDYSEAANWVIQLMAKNGTEKDGGFTETQLQELREKEPRK 515
>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
protein-like (HSP26.5-P) contains Pfam profile: PF00011
Hsp20/alpha crystallin family; identified in Scharf,
K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
Length = 232
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 213 SDRKSPRQKPHCFPSIKNRFSLWSNQD 293
S++KSPRQ FP + R SLW N D
Sbjct: 60 SEKKSPRQN---FPRRRGRKSLWRNTD 83
>At1g09390.1 68414.m01050 GDSL-motif lipase/hydrolase family protein
Similar to early nodulin ENOD8 [Medicago sativa]
GI:304037, lanatoside 15'-O-acetylesterase [Digitalis
lanata] GI:3688284, elicitor-induced glycoprotein iEP4
[Daucus carota] GI:1911765; contains InterPro Entry
IPR001087 Lipolytic enzyme, G-D-S-L family
Length = 370
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -1
Query: 423 LISSFTSSVKYCKLSSVRSSSITKPSDLLEILTSYGGRRFW 301
+ SF+ + Y ++ + + I++ ++IL GGR+FW
Sbjct: 176 IADSFSKGLSYSRVVKLIPNVISEIKSAIKILYDEGGRKFW 216
>At2g20880.1 68415.m02461 AP2 domain-containing transcription
factor, putative similar to AP2 domain containing
protein RAP2.4 [Arabidopsis thaliana] GI:2281633
Length = 336
Score = 28.3 bits (60), Expect = 6.0
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +2
Query: 95 PHKPGFYAPSSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEP--KTEASLLSIH-QE 265
P+ YA PP+ T + F L P Q Q + P +P + + ++S Q+
Sbjct: 71 PYLVSSYATPQPPTTTTCSVSF--PFYLPPAIQ-NQQRFLHPNDPSGQRQQQMISFDPQQ 127
Query: 266 QVQPLVEPRPQHQNLLPPY 322
QVQP V + Q Q L Y
Sbjct: 128 QVQPYVAQQQQQQQHLLQY 146
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 39 LXHPYPQRQPQSHQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNK-RLSTLSS 215
L H Q+Q Q Q QH Q + +HHHQ Q S + LN+ + T
Sbjct: 737 LQHHQQQQQQQQQQQQQH----QLTQLQHHHQQQQQASPLNQMQQQTSPLNQMQQQTSPL 792
Query: 216 DRKSPRQKP 242
++ +Q+P
Sbjct: 793 NQMQQQQQP 801
>At1g03630.1 68414.m00343 protochlorophyllide reductase C,
chloroplast / PCR C / NADPH-protochlorophyllide
oxidoreductase C (PORC) identical to SP:O48741
protochlorophyllide reductase C, chloroplast precursor
(EC 1.3.1.33) (PCR C) (NADPH-protochlorophyllide
oxidoreductase C) (POR C) [Arabidopsis thaliana]
Length = 401
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 93 VPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKSPRQKPHCFPSIK 263
+P+ + AS ++T TG+ S + +++STL + ++ RQKP I+
Sbjct: 10 LPSTISIQKEGKFNASLKETTFTGSSFSNHLRAEKISTLLTIKEQRRQKPRFSTGIR 66
>At5g15430.1 68418.m01806 calmodulin-binding protein-related has
weak similarity to calmodulin-binding proteins
Length = 478
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 57 QRQPQSHQNSQHVPTNQD--STRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKSP 230
Q + + ++V ++D +TR +A +S ITGN + ++ S+ SP
Sbjct: 315 QEEEDEEEEDENVSVSEDKNTTREGKSKAFSAESAITGNAMKLRIRRGKIIDFGSEGNSP 374
Query: 231 RQ 236
R+
Sbjct: 375 RK 376
>At3g27300.1 68416.m03412 glucose-6-phosphate 1-dehydrogenase / G6PD
(ACG9) identical to glucose-6-phosphate 1-dehydrogenase
(acg9) [Arabidopsis thaliana] GI:5732195
Length = 516
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 299 HQNLLPPYEVKISSRSDGFVIDEDLTDDSLQYLTDD 406
HQ L P EV I + + DE+L D YL D+
Sbjct: 57 HQGFLNPDEVHIFGYARSKITDEELRDKIRGYLVDE 92
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 25 SGRCNSXIHIHNDNHKATRTHNTSPQTRILRAVITTKRHRPIQPLLAT 168
SG + H HN+NH + N P T++ R ++ P+ PL++T
Sbjct: 154 SGNLHHHHHSHNNNH---QRKNNFPPTKVFR---SSPSPAPVSPLVST 195
>At3g01750.1 68416.m00112 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 664
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 189 NKRLSTLSSDRKSPRQKPHCFPSIKNRFSLWSNQDLNT 302
NKR + S++ SPR K F S+++R S +S +++
Sbjct: 555 NKRTLAVRSNQSSPRAKKKRFGSVRSRSSSFSKISIHS 592
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 564 DAKRQRLSDFSG-FSPEVMXALVESSNGGARAQLK-MALSKMGG 689
+ + Q LS+ SG FSP V+ ALV SS G + +A K GG
Sbjct: 848 ETRLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG 891
>At1g53165.1 68414.m06023 protein kinase, putative similar to
serine/threonine protein kinase 24 [Homo sapiens]
SWISS-PROT:Q9Y6E0
Length = 1007
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 60 RQPQSHQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKR 197
+ PQ+ + Q V +NQ S + SQ ST ++S NKR
Sbjct: 679 KPPQARERRQEVNSNQTSQKTSRTSGSQLSSTFGVPEISEGGFNKR 724
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,635,545
Number of Sequences: 28952
Number of extensions: 348680
Number of successful extensions: 1338
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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