Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0130
         (632 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1VJ65 Cluster: Polynucleotide adenylyl transferase; n=...    33   4.3  
UniRef50_Q833R9 Cluster: Permease, putative; n=14; Firmicutes|Re...    33   7.5  
UniRef50_Q2GF08 Cluster: Putative uncharacterized protein; n=1; ...    32   10.0 
UniRef50_A3J0W5 Cluster: Putative uncharacterized protein; n=1; ...    32   10.0 

>UniRef50_Q1VJ65 Cluster: Polynucleotide adenylyl transferase; n=1;
           Psychroflexus torquis ATCC 700755|Rep: Polynucleotide
           adenylyl transferase - Psychroflexus torquis ATCC 700755
          Length = 258

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
 Frame = -3

Query: 492 FVY-ITYGFLCRVL-WNKLNYILNYN*ELFIYLLFLISCNNKAFTIIQSIDELEQDIEHD 319
           FVY I    L  +L  N LN+I  Y      + + +I  NNK +T+    ++ +QD  + 
Sbjct: 64  FVYDINPAELVEILKTNNLNFISTY----INFGVIIIKLNNKEYTLTSLREDFKQDGRYT 119

Query: 318 KCHLVNYYRRDG--RHLEIKNIFKH**SC*SHKKTFVTHNGI-----MLVINIDDNNLSA 160
           K   +   ++D   R L I +++       +++K +  HNG+       VI IDD     
Sbjct: 120 KVRYIKSIKKDSLRRDLTINSLYMD-----NNQKVYDFHNGLEHLENSKVIFIDDFKKKC 174

Query: 159 LPGN 148
           L  N
Sbjct: 175 LEDN 178


>UniRef50_Q833R9 Cluster: Permease, putative; n=14; Firmicutes|Rep:
           Permease, putative - Enterococcus faecalis
           (Streptococcus faecalis)
          Length = 425

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = -3

Query: 414 LFIYLLFLISCNNKAFTIIQSIDELEQDIEHDKCHLVNYYRRDGRHLEIKNIFK 253
           +FI L  ++SC     TI++S +E+E+ +       ++  ++DG++  + N FK
Sbjct: 19  IFIILTIVLSCLYSCLTIMKSSNEIEKALYESSNSSISITKKDGKYFNV-NQFK 71


>UniRef50_Q2GF08 Cluster: Putative uncharacterized protein; n=1;
           Neorickettsia sennetsu str. Miyayama|Rep: Putative
           uncharacterized protein - Neorickettsia sennetsu (strain
           Miyayama)
          Length = 457

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 226 FVASTRLLVFKYIFYFKMSTIASVIINEVTFIVFYVLF 339
           F   T  LV KY  YF +  ++ V++N VT +VF + F
Sbjct: 187 FPIYTATLVAKYSVYFALELVSGVLVNVVTRVVFPLSF 224


>UniRef50_A3J0W5 Cluster: Putative uncharacterized protein; n=1;
           Flavobacteria bacterium BAL38|Rep: Putative
           uncharacterized protein - Flavobacteria bacterium BAL38
          Length = 232

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = -3

Query: 597 NIVSIKVYLTMSC*ILDYLLFIELSLRNNVS*QRFFVYITYGFLCRVLWNKLNYILNYN 421
           ++ +I  Y+ +   +L YLL+  LS  N  S   F +YI YG L  V+   L++++ +N
Sbjct: 111 DVNNISFYIILM--LLFYLLYNVLSFINKTSQIEFSIYIIYGILLLVM-GLLSFLIQFN 166


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 531,484,065
Number of Sequences: 1657284
Number of extensions: 9870139
Number of successful extensions: 20889
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20886
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)