Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0130
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    29   0.42 
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    26   3.9  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   9.1  

>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 480 TYGFLCRVLWNKLNYILNYN*ELFIYLLFLISCNNKAFTII--QSIDELEQ 334
           T+ F+C V W KL++ L Y+  L +Y L      +K+  +I  +  DE +Q
Sbjct: 40  TFAFICDVFWLKLSFTLRYS-TLQVYNLSKRPTGDKSTVLIDVREPDEFKQ 89


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/50 (26%), Positives = 30/50 (60%)
 Frame = -3

Query: 399 LFLISCNNKAFTIIQSIDELEQDIEHDKCHLVNYYRRDGRHLEIKNIFKH 250
           +  ++ ++K   ++Q + EL  ++ H+   L+N+ +R+G  LE +  FK+
Sbjct: 432 ILYVNLHDKRKCLLQGVIELT-NLGHN-LELINFIKRNGDPLEWRKFFKN 479


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 10   NNHILPGIQSE*LF*SNRIQQYSSRL 87
            +NHI P IQS+ L  SN IQ    RL
Sbjct: 1119 HNHIDPDIQSKVLNLSNTIQSLIGRL 1144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,243
Number of Sequences: 5004
Number of extensions: 43597
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)