Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0130
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0134 + 5820068-5820178,5822439-5822508,5822893-5822939,582...    29   4.1  
03_05_1062 - 30043596-30043811,30044083-30044178,30044387-300444...    28   7.1  
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438...    28   7.1  
02_05_1019 - 33549576-33550247,33550885-33551121,33551206-335513...    28   7.1  

>03_02_0134 +
           5820068-5820178,5822439-5822508,5822893-5822939,
           5823067-5823175,5823355-5823440,5823768-5823858,
           5824204-5824289,5824649-5824762
          Length = 237

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -3

Query: 198 MLVINIDDNNLSALPGN-GGDIALDEL 121
           ML++N+ DN L ALP + GG  +L+EL
Sbjct: 142 MLLLNVSDNKLIALPESIGGCSSLEEL 168


>03_05_1062 -
           30043596-30043811,30044083-30044178,30044387-30044448,
           30044990-30045023,30045220-30046173
          Length = 453

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 195 LVINIDDNNLSALPGNGGDIALDELPPLVIGS 100
           +V+ +++     + G GG   LDE+  LV+GS
Sbjct: 10  VVVEVEEEEERGVKGGGGVAGLDEVEGLVVGS 41


>02_05_1298 -
           35542250-35542831,35543218-35543410,35543511-35543827,
           35544144-35544186,35545845-35545900,35546028-35546102,
           35546249-35546345,35546422-35546546,35547063-35547167,
           35547295-35547432,35547758-35547831,35547995-35548065,
           35548168-35548363,35548482-35548572,35549264-35549342,
           35549431-35549491,35549745-35549814,35549913-35549987,
           35550119-35550194,35550403-35550489,35550744-35550880,
           35551000-35551063,35551351-35551415
          Length = 958

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 198 MLVINIDDNNLSALPGNGGDIAL 130
           ++V+NI  NN+S+LP   GD+ L
Sbjct: 70  LVVLNISHNNISSLPAAIGDLPL 92


>02_05_1019 -
           33549576-33550247,33550885-33551121,33551206-33551317,
           33551998-33552215,33553084-33553194
          Length = 449

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +1

Query: 31  IQSE*L-F*SNRIQQYSSRLLQHNRTYY--QWREFV*CYIPTITR 156
           +Q+E L F +N+ ++  S+ LQH   YY   WR +  C+I    R
Sbjct: 333 LQAEDLKFVANQFRRLHSKRLQHTFRYYSHHWRTWASCFIQAAWR 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,507,426
Number of Sequences: 37544
Number of extensions: 244775
Number of successful extensions: 481
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)