Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0130
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32653| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_5816| Best HMM Match : RVT_1 (HMM E-Value=3e-16)                    27   9.6  

>SB_32653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 381 NNKAFTIIQSIDELEQDIEHDKCHLVNYYRRDGRH 277
           N     +I S + L +D+  D+CH++ + R   RH
Sbjct: 371 NKPCCLMISSDNCLTRDVREDQCHVITFERSQKRH 405


>SB_5816| Best HMM Match : RVT_1 (HMM E-Value=3e-16)
          Length = 904

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 396 FLISCNNKAFTIIQSIDELEQDIEHDK 316
           FL SC NK   +I+ +DEL  ++++DK
Sbjct: 391 FLGSCYNKYTALIKIVDELLFNLDNDK 417


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,247,224
Number of Sequences: 59808
Number of extensions: 295242
Number of successful extensions: 866
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)