Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0130
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z93380-5|CAB07601.1|  240|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z50797-4|CAA90674.1|  339|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical
           protein F09B9.1 protein.
          Length = 710

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +1

Query: 223 FFVASTRLLVFKYIFYFKMSTIASVIINEVTFIVFYV 333
           FFV S   LV  Y+F FK +    +I+N VT+I+FYV
Sbjct: 312 FFVLSG--LVLTYMF-FKTTPKKKMIVNPVTWIMFYV 345


>Z93380-5|CAB07601.1|  240|Caenorhabditis elegans Hypothetical
           protein F28C12.6 protein.
          Length = 240

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -3

Query: 408 IYLLFLISCNNKAFTIIQSIDELEQDIEHDK 316
           I+L+ +I   NKAFT++ +ID++ +  + +K
Sbjct: 199 IFLIIIIVIINKAFTLLSTIDDITKKEKDEK 229


>Z50797-4|CAA90674.1|  339|Caenorhabditis elegans Hypothetical
           protein T22H6.3 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 205 IMRYEGFFVASTRLLVFKYIFYFKMS-TIASVIINEVTFIVFYVLF*FVDALNYSERF 375
           I++Y GF  A    +V  Y+ +FK +  +    +  + F +F +++  ++ L +   F
Sbjct: 9   IIQYSGFVSAQIINVVLLYLLFFKANKKLGKYRVLMIVFSIFGMMYSLIEVLTFPVMF 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,330,649
Number of Sequences: 27780
Number of extensions: 238525
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)