Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0130
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24610.1 68415.m02940 cyclic nucleotide-regulated ion channel...    29   3.4  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    28   5.9  

>At2g24610.1 68415.m02940 cyclic nucleotide-regulated ion channel,
           putative (CNGC14) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (GI:4581205)
           [Arabidopsis thaliana]
          Length = 726

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 49  F*SNRIQQYSSRLLQHNRTYY--QWREFV*CYIPTITR 156
           F +N+ ++  S+ LQH   YY  QWR +  C++    R
Sbjct: 592 FVANQFRRLHSKKLQHTFRYYSHQWRTWAACFVQVAWR 629


>At4g02660.1 68417.m00361 WD-40 repeat family protein /
           beige-related contains Pfam PF00400: WD domain, G-beta
           repeat; similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; lysosomal trafficking regulator - Bos
           taurus, EMBL: AF114785
          Length = 3471

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -2

Query: 142 GYSTRRTPSTGNRF--CCAEGAG 80
           GYS R+TPS  NR+   C +G+G
Sbjct: 470 GYSRRQTPSANNRYDEPCEQGSG 492


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,368,069
Number of Sequences: 28952
Number of extensions: 210213
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)