SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0129
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   363   e-101
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   359   e-100
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   159   3e-40
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    93   3e-20
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    32   0.059
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    31   0.14 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.55 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    29   0.72 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    28   0.95 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.3  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   3.8  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.8  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.1  
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    26   5.1  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    26   5.1  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   6.7  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   6.7  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   8.9  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   8.9  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  363 bits (892), Expect = e-101
 Identities = 162/208 (77%), Positives = 182/208 (87%)
 Frame = +2

Query: 2   DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 181
           DIERPTY NLNRLI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++S
Sbjct: 222 DIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVS 281

Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 361
           A KA+HE  SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK+
Sbjct: 282 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKS 341

Query: 362 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDL 541
           +RTIQFVDWCPTGFK+GI Y+PP  VPG  +A V RAVCMLSNTT+IAEAW+RLDHKFDL
Sbjct: 342 RRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDL 401

Query: 542 MYAKRAFVHWYVGXGMXXGXFSEARXDL 625
           MY+KRAFVHWYVG GM  G FSEAR DL
Sbjct: 402 MYSKRAFVHWYVGEGMEEGEFSEAREDL 429


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  359 bits (884), Expect = e-100
 Identities = 161/208 (77%), Positives = 181/208 (87%)
 Frame = +2

Query: 2   DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 181
           DIERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++S
Sbjct: 218 DIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVS 277

Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 361
           A KA+HE  SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK 
Sbjct: 278 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKA 337

Query: 362 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDL 541
           KRTIQFVDWCPTGFK+GI  +PP  + G ++A V RAVCMLSNTT+IAEAW+RLDHKFDL
Sbjct: 338 KRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDL 397

Query: 542 MYAKRAFVHWYVGXGMXXGXFSEARXDL 625
           MY+KRAFVHWYVG GM  G FSEAR DL
Sbjct: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDL 425


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  159 bits (386), Expect = 3e-40
 Identities = 75/207 (36%), Positives = 121/207 (58%)
 Frame = +2

Query: 5   IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
           I+ P+Y +LN L+  +++ +T S RF G LN DL +   N+VP+PR+HF +V +AP+ + 
Sbjct: 217 IKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAI 276

Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
             +  + +SV E+T   F+  N MV  DPRHG+Y+    L+RG V  K+V+  I +++TK
Sbjct: 277 GSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTK 336

Query: 365 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDLM 544
            +  FV+W P      +   PP      DL   + +   + N+T+I E + RL  +F  M
Sbjct: 337 NSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAM 388

Query: 545 YAKRAFVHWYVGXGMXXGXFSEARXDL 625
           + ++AF+HWY G GM    F+EA  ++
Sbjct: 389 FRRKAFLHWYTGEGMDEMEFTEAESNM 415


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 51/193 (26%), Positives = 99/193 (51%), Gaps = 4/193 (2%)
 Frame = +2

Query: 8   ERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS-- 181
           + PT+   N+L+  ++S+ T +LR+ G +N DL     +L+P PR HF L +Y P  +  
Sbjct: 221 QNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQ 280

Query: 182 -AEKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATI 355
             E     + +V ++      P NQMV  +P +   +++   + +G+  P DV+ ++  I
Sbjct: 281 VEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRI 340

Query: 356 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKF 535
           + +R   F+ W P   +V ++ + P +     ++ +     ML+N T+IA  + R   ++
Sbjct: 341 RERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQY 395

Query: 536 DLMYAKRAFVHWY 574
           D +  + AF+  Y
Sbjct: 396 DRLRKRNAFLEQY 408


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 32.3 bits (70), Expect = 0.059
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
 Frame = +3

Query: 102 TSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPV 275
           TS S  L+   +  +++    T  S+ P  PT+   S  +P + T+ ++  +    +TPV
Sbjct: 381 TSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPV 440

Query: 276 MASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 431
            ++      CT  TS P   T   + S P   +N +T       S   TS P
Sbjct: 441 TSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490



 Score = 30.3 bits (65), Expect = 0.24
 Identities = 29/105 (27%), Positives = 50/105 (47%)
 Frame = +3

Query: 111 SSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTW 290
           S+ + +  TPV++S++  T  SS P   T      P + T+ ++  +    +TPV ++  
Sbjct: 499 STSVPYTSTPVTSSNY--TISSSTPVTST------PVTTTNCTTSTSVLYTSTPVTSTPL 550

Query: 291 LAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 425
               CT  TS P   T P   S  ++ S++     PV+ +  TTS
Sbjct: 551 ATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594



 Score = 28.3 bits (60), Expect = 0.95
 Identities = 27/107 (25%), Positives = 48/107 (44%)
 Frame = +3

Query: 105 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 284
           +P+   T   TP++T++   T  +S+P   T  +  +P + T+ ++  +    +TPV ++
Sbjct: 410 TPTVPPTSSSTPLTTTNC--TTSTSVPYTSTPVT-STPLATTNCTTSTSVPYTSTPVTST 466

Query: 285 TWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 425
                 CT  TS P   T   + S P   +N +T       S   TS
Sbjct: 467 PLTTTNCTTSTSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTS 511



 Score = 25.8 bits (54), Expect = 5.1
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
 Frame = +3

Query: 135 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 314
           TP++T++   T  +S+P   T  +  +P + T+ ++  +    +TPV +S +     T V
Sbjct: 466 TPLTTTNC--TTSTSIPYTSTPVT-STPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPV 522

Query: 315 TSYPRM*TRPSLPSKPSVLSNSSTGVQ-PVSRSVSTTS 425
           TS P   T  +  +  SVL  S+     P++ +  TTS
Sbjct: 523 TSTPV--TTTNCTTSTSVLYTSTPVTSTPLATTNCTTS 558


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 24/89 (26%), Positives = 33/89 (37%)
 Frame = +3

Query: 177 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 356
           S+P+ P     P   S     + P       P + S        VV   P +  RP++P 
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPV-----APEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567

Query: 357 KPSVLSNSSTGVQPVSRSVSTTSHPPWCP 443
            P  LS     V PV+  V +   PP  P
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAP 596



 Score = 25.4 bits (53), Expect = 6.7
 Identities = 23/90 (25%), Positives = 31/90 (34%)
 Frame = +3

Query: 177 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 356
           S+P+RP +   P   S       P       P +    +A       S P+    P  P 
Sbjct: 558 SVPQRPAVPVVPEALSVPQPPVAPVA--PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPE 615

Query: 357 KPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 446
            PSV    +  V P + SV      P  PE
Sbjct: 616 VPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645



 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +3

Query: 309 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 443
           VV   P +  RP++P  P   S       PV   V +   PP  P
Sbjct: 642 VVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 23/81 (28%), Positives = 41/81 (50%)
 Frame = +3

Query: 144 STSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSY 323
           STS  + T  SS   RP  +S  S    +H SS  ++  ++ PV ++ +     +  +S+
Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS-SSAPVSSAFYHNSTSSRSSSH 435

Query: 324 PRM*TRPSLPSKPSVLSNSST 386
               +  SL SKP + ++SS+
Sbjct: 436 SSSHSLSSLSSKPILTASSSS 456


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = -1

Query: 349 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGKLFMVGLLGRDDW 170
           S G   +LGY ++     A++V+A + V   HL+ G      D  + K       G D  
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDML 459

Query: 169 RVRDQWEVDTGVR 131
             R Q+E++ G++
Sbjct: 460 VDRVQYELEAGLQ 472


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 221 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 346
           +  ACFEP N    C   H K   C  L    +  KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 108  PSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 254
            P+++      P S +    T +SS+P  P  N+ PSP S + AS+ P R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 171 QSSLPRRPTMNSFPSPRSQTHASSPPTR 254
           + SLPRRP+     +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +3

Query: 345 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 431
           +LP KPS+   +++S   V+P S   STTS+P
Sbjct: 5   TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 105 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSP 245
           SPS  LT  L   S++  S  + + + R+ T +S  SP+ Q+  S+P
Sbjct: 619 SPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTP 664


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 326 WVRRHHGTAYSKPCTCHDGG 267
           W R H    Y+KPC   DGG
Sbjct: 16  WRRDHPFGFYAKPCKSSDGG 35


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +3

Query: 132 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 284
           LTP + S +S +  +S  +R ++N+ PS  + +H+SS  T   +  PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 342 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 437
           P  PS+P+++SN ST  G+Q V   V   +   W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 22/84 (26%), Positives = 36/84 (42%)
 Frame = +3

Query: 138 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVT 317
           P+  SH S  +  S+ R    +       + H S  PT+  +AT +  S   AV     T
Sbjct: 253 PLDASHLSSQQLLSMYRDQVSHGVTPSTFRNHESFMPTQLVSATELSKSVDNAVLPIPPT 312

Query: 318 SYPRM*TRPSLPSKPSVLSNSSTG 389
           + P +   P   S P + S +++G
Sbjct: 313 TAPAV-VSPPASSFPLMSSAATSG 335


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +3

Query: 324 PRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPP 434
           PR      LP K  VL    T +  VSR   TTS  P
Sbjct: 293 PRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTTSGQP 329


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +3

Query: 264 ATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 443
           +TP ++S   A    VV+S     T  +  S  S  ++SS    P S SVS      W P
Sbjct: 245 STPAVSSA-AASSSAVVSSVVSSATSVAASSTISSATSSSASASPTSSSVSGKRGLAWIP 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,684
Number of Sequences: 5004
Number of extensions: 55191
Number of successful extensions: 238
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -