Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0128
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   1.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   3.3  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   5.8  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   7.7  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = -1

Query: 474 RYKLYNLCIADCSTFTSRNINISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLIN 295
           R+++ N    +C    S + +  S  +   S F+   V S++++   R  FIV      +
Sbjct: 281 RFRVINAGFLNCPIEVSIDNHTLSVISTDGSDFNATEVDSLVTYAGERFDFIVTADQPQD 340

Query: 294 KLWFHF 277
             W HF
Sbjct: 341 VYWMHF 346


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 327 IFIVIPHTLINKLWFHFGSDS 265
           IFI+IP TL +  +F  G +S
Sbjct: 501 IFIIIPVTLTSVCYFMIGLNS 521


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 228 VFCRTRGTCFQWIYAFS 178
           VFCR R   + + YAFS
Sbjct: 112 VFCRDRVNPYLFYYAFS 128


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 155 EEELFDAIDGLFG 117
           +E+L+DAI+ L+G
Sbjct: 337 KEKLYDAIEALYG 349


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,935
Number of Sequences: 336
Number of extensions: 2571
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)