Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0128
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458 30 2.2
12_01_0272 + 1985348-1986036,1986142-1988020 29 2.8
11_01_0271 + 2039100-2041760 29 2.8
04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493... 29 3.8
06_01_0178 + 1386981-1387505 28 6.6
03_05_1157 + 30816143-30816359,30817005-30817120 28 6.6
12_01_0252 + 1868670-1869200,1870167-1871120 28 8.7
11_01_0475 - 3669734-3671452 28 8.7
11_01_0252 + 1934505-1935032,1936001-1936957 28 8.7
10_01_0352 - 3870921-3871272,3871383-3871479,3871541-3871621,387... 28 8.7
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684... 28 8.7
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632... 28 8.7
>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
Length = 1217
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/75 (22%), Positives = 36/75 (48%)
Frame = -1
Query: 609 IINSCDSRSTISILFNTSPSCFCASCVVLRELKLTNKNAYLTAFVRYKLYNLCIADCSTF 430
+INSCDS +S+ + T + ++ + L++ + + L L +ADC F
Sbjct: 1028 VINSCDSMDLLSLAYGTHHLTSLEAIIIKDCIFLSSLDGFENLIA---LRKLVVADCKNF 1084
Query: 429 TSRNINISSCRAIKT 385
++++ ++KT
Sbjct: 1085 CFLPADLNALISLKT 1099
>12_01_0272 + 1985348-1986036,1986142-1988020
Length = 855
Score = 29.5 bits (63), Expect = 2.8
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Frame = -1
Query: 630 SGAFXNYIINSCDSRSTISILFNTSPSCFCASCVVLRELKLTNKNAYLTAFVRYKLYNLC 451
SG + ++N+ + R F + + F AS ++ + L N+ Y L +C
Sbjct: 548 SGHVGDPVLNNDNYRHRYLAFFFCNTTAFVASLAII--MLLVNRKLSARGIRSYAL-RVC 604
Query: 450 IADCSTFTSRNINISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIP--HTLINKLWFHF 277
+ SCR +KTS + +VL+V+ + + +V L+N L
Sbjct: 605 VILVLVGLMGAFAAGSCRKVKTSIYVFVLVLAVLLCIAFQVALVVSGSLRRLVNSLLSKL 664
Query: 276 GS 271
G+
Sbjct: 665 GA 666
>11_01_0271 + 2039100-2041760
Length = 886
Score = 29.5 bits (63), Expect = 2.8
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Frame = -1
Query: 630 SGAFXNYIINSCDSRSTISILFNTSPSCFCASCVVLRELKLTNKNAYLTAFVRYKLYNLC 451
SG + ++N+ + R F + + F AS ++ + L N+ Y L +C
Sbjct: 583 SGHVGDPVLNNDNYRHRYLAFFFCNTTAFVASLAII--MLLVNRKLSARGIRSYAL-RVC 639
Query: 450 IADCSTFTSRNINISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIP--HTLINKLWFHF 277
+ SCR +KTS + +VL+V+ + + +V L+N L
Sbjct: 640 VILVLVGLMGAFAAGSCRKVKTSVYVFVLVLAVLLCIAFQVALVVSGSLRRLVNSLLSKL 699
Query: 276 GS 271
G+
Sbjct: 700 GA 701
Score = 27.9 bits (59), Expect = 8.7
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Frame = -1
Query: 588 RSTISILFNTSPSCFCASCVVLRELKLTNKNAYLTAFVRYKLYNLCIADCSTFTSRNINI 409
R + FNT+ F AS V + + L ++ F L+ +C+
Sbjct: 232 RFMVFFYFNTT--AFVASLVTI--MLLMSRTVSRHGFRSSALW-VCVGAAMVGLMGAFAA 286
Query: 408 SSCRAIKTSHFHIRIVLSVISFVIVRA-IFIVIPHTLINKLWFHFGSDSI 262
SCR+ KTS + I +V +V+ ++ ++A +F P K W H +++
Sbjct: 287 GSCRSFKTSIYVIALVGAVLLYIAIQAMVFFSEP----VKDWLHRAGETL 332
>04_03_0520 -
16748646-16748741,16748821-16748895,16749260-16749362,
16749635-16749783,16750986-16751110,16751320-16751389
Length = 205
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 245 QTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMT 343
Q K+ + LP + SL + G TMK+ART T
Sbjct: 170 QQKVHVQIDLPSQSSSLSITKKGQTMKVARTNT 202
>06_01_0178 + 1386981-1387505
Length = 174
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 382 TGFDGSATGDVNISGGEGGAVGDAQVVQFVTNKRG 486
+G G GD SGG+GG GD V+ TN RG
Sbjct: 113 SGGAGGRGGDGG-SGGQGGRGGDGGGVRSCTNSRG 146
>03_05_1157 + 30816143-30816359,30817005-30817120
Length = 110
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -1
Query: 321 IVIPHTLINKLWFHFGSDSIVLIFVW 244
++IPH +NK FH S +++LIF+W
Sbjct: 85 LIIPHDTLNKGKFHKRS-NLLLIFLW 109
>12_01_0252 + 1868670-1869200,1870167-1871120
Length = 494
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 385 GFDGSATGDVNISGGEGGAVGDAQVVQFVTNKRGQVSILIGQFKFT 522
G GS G +GG GGA ++V V++ R +V +L+ QF ++
Sbjct: 79 GGGGSGGGGRGGAGGGGGAPATPELVIPVSSIRYEVLVLVLQFLYS 124
>11_01_0475 - 3669734-3671452
Length = 572
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 200 SSGSTHFRFAGPLCEEEELFDAID 129
SSG+ HFR +G + +E+F A++
Sbjct: 486 SSGAKHFRVSGSVASPDEIFAALE 509
>11_01_0252 + 1934505-1935032,1936001-1936957
Length = 494
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 385 GFDGSATGDVNISGGEGGAVGDAQVVQFVTNKRGQVSILIGQFKFT 522
G GS G +GG GGA ++V V++ R +V +L+ QF ++
Sbjct: 78 GGGGSGGGGRGGAGGGGGAPATPELVIPVSSIRYEVLVLVLQFLYS 123
>10_01_0352 -
3870921-3871272,3871383-3871479,3871541-3871621,
3874854-3875028,3875650-3875661
Length = 238
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 355 GEDDSNMEMTGFDGSATGDVNISGGEGGAVGDA 453
G D + + +G A G + GG G VGDA
Sbjct: 127 GSDPNGVGRRAPEGRAPGCARVEGGSSGTVGDA 159
>04_04_1249 -
32067644-32067787,32068245-32068346,32068415-32068438,
32068439-32068543,32068625-32068729,32068885-32068966,
32069254-32069456,32069534-32069692,32070045-32070154,
32070264-32070405,32070544-32070690,32070773-32070847,
32070923-32071132,32071223-32071426,32071514-32071633,
32071743-32071852,32072033-32072177,32072266-32072499,
32072611-32072646
Length = 818
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +1
Query: 394 GSATGDVNISGGEGGAVGDAQVVQFVTNKRGQVSILIGQF--KFTKDYTRGAKTRWRCIK 567
G+ + ++ GGEGGA A V++F T + +L + K DY + IK
Sbjct: 43 GTNSDTASVDGGEGGAGPAAPVIEF-TGREDVERLLAEKMKGKSKTDYKGRTEQMSEYIK 101
Query: 568 KNRYC 582
K R C
Sbjct: 102 KLRAC 106
>01_07_0187 +
41862342-41862622,41862730-41862912,41863236-41863299,
41863547-41863756,41863850-41864035,41864180-41864478,
41864584-41864731,41864798-41864863,41864945-41865217,
41865523-41865741,41865864-41866013
Length = 692
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 333 RAIFIVIPHTLINKLWFHFGSDSIVLIFVWY 241
R + +P TL+++LW HF + +V Y
Sbjct: 142 RLAILQLPFTLLSRLWVHFACLCFISFYVVY 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,808,298
Number of Sequences: 37544
Number of extensions: 304794
Number of successful extensions: 1085
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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