Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0128
(726 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 33 0.31
SB_16004| Best HMM Match : efhand (HMM E-Value=1.7) 32 0.41
SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3) 32 0.54
SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_46967| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-19) 29 2.9
SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_36251| Best HMM Match : BNR (HMM E-Value=1.7e-11) 29 5.1
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21) 28 6.7
SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6) 28 6.7
SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5) 28 8.9
SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 28 8.9
SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5) 28 8.9
SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17) 28 8.9
SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5) 28 8.9
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17) 28 8.9
SB_54171| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_47317| Best HMM Match : DNA_ligase_OB (HMM E-Value=2.2) 28 8.9
SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8) 28 8.9
SB_32624| Best HMM Match : rve (HMM E-Value=0.00042) 28 8.9
SB_32458| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18) 28 8.9
SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068) 28 8.9
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 32.7 bits (71), Expect = 0.31
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = -1
Query: 393 IKTSHFHIRIVLSVISFVIVRAIFIVIP--HTLINKLWFHFGS-DSIVLIFVWYRHKFV- 226
+ S F + +++ V+ V+V + + T +N L + + D + L+FV ++ F+
Sbjct: 598 VLASVFAVLVLIGVVGNVLVCLVILRFSSMRTPMNYLLLNLAAADLLTLLFVSPQYVFIH 657
Query: 225 -FCRTRGTCFQWIYAFSFR 172
F G CF + +AF+FR
Sbjct: 658 TFVHPIGECFSFFFAFAFR 676
>SB_16004| Best HMM Match : efhand (HMM E-Value=1.7)
Length = 201
Score = 32.3 bits (70), Expect = 0.41
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -1
Query: 660 LNIFNSMVMLSGAFX--NYIINSCDSRSTISILFNTSPSCFCASCVVLRELKLTNKNAYL 487
+++ + L+ A+ N I +C + ISI P A+ V R +KL + NAY+
Sbjct: 96 MSVLSDSPCLNSAYISVNRTIKTCSNNGNISIYRTIKPCSNSANISVYRTIKLCSNNAYI 155
Query: 486 TAF 478
+ +
Sbjct: 156 SVY 158
>SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3)
Length = 345
Score = 31.9 bits (69), Expect = 0.54
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Frame = -1
Query: 510 LTNKNAYLTAFVRYKLYNLCIADCSTFTSRNINISSCRAIKTSHFHIR-IVLSVISFVIV 334
++ N Y+ AF + + I D +T + I ++ I T I +++S +
Sbjct: 129 MSTVNLYVIAF---SIPIVVIRDRNTMQALLITVAVISVITTGAQAINPCEQTIVSKCVT 185
Query: 333 RAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFVFCRTRG--TCFQWIY 187
I I +T NKL H +D VL ++ K CR +G T FQ +Y
Sbjct: 186 SYISEFIGNTSTNKLDVHCTADKAVLSYIVMDRKLNVCRWQGYWTLFQLLY 236
>SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 31.5 bits (68), Expect = 0.72
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = -1
Query: 543 CASCVVLRELKLTNKNAYLTAFVRYKLYNL--CIADCSTFTSRNINISSCRAIKT---SH 379
C + L ++ K F+ +Y L + S T +++ R I T H
Sbjct: 71 CIVSIPLDLIERATKRFLFGEFLCNIIYPLQTILMSVSVMTLLGMSMERYRLIVTPFRQH 130
Query: 378 FHIRIVLSVISFVIVRAIFIVIPHTLINKL 289
F R VL V+ FV V +I IV+P+ L+ +L
Sbjct: 131 FGPRTVLGVVVFVWVLSIAIVLPYMLVLRL 160
>SB_46967| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-19)
Length = 341
Score = 29.5 bits (63), Expect = 2.9
Identities = 33/114 (28%), Positives = 47/114 (41%)
Frame = -1
Query: 585 STISILFNTSPSCFCASCVVLRELKLTNKNAYLTAFVRYKLYNLCIADCSTFTSRNINIS 406
S + I N+S F AS R LK T+ N L + L +A + NI+
Sbjct: 46 SLLIIATNSSVIYFVAS---RRYLK-TSTNIALASLAASDLLTGLLA-IPLIVTCNIHHK 100
Query: 405 SCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVW 244
C A+ + I + V+ +I+I H + KLW SIVL VW
Sbjct: 101 VCLAMDITSRFIAYSTVLHLLVVTLERYIMIVHAMKYKLWITKKRTSIVLTSVW 154
>SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 191 IHWKQVPLVLQKTNL*RYQTK 253
+H++ +P V+QKTNL RY K
Sbjct: 24 VHFRSMPRVVQKTNLTRYNLK 44
>SB_36251| Best HMM Match : BNR (HMM E-Value=1.7e-11)
Length = 210
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 358 EDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVVQFVTNKRGQVSILIG 507
E++SN + DG T + G+ G A VQFV N RG+ + +G
Sbjct: 123 ENNSNNKAITEDGGKTWKLV---GQNTGFGYASCVQFVPNSRGKALVCVG 169
>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 615 NYIINSCDSRSTISILFNTSPSCFCA 538
N++ + C S++FN P CF A
Sbjct: 345 NFLFSECSKAQMWSVIFNKGPKCFIA 370
>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2937
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 564 NTSPSCFCASCVVLRELKLTNKNAY---LTAFVRYKLYNLCIADCSTF 430
NT CASCV + + TNKN Y ++A +Y +C++ S F
Sbjct: 1323 NTFALNSCASCVNVLPISNTNKNLYDIRMSAAGGSDIYAVCMSSDSNF 1370
>SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21)
Length = 532
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/62 (29%), Positives = 35/62 (56%)
Frame = +2
Query: 290 SLLMRVCGMTMKMARTMTKLITERTILIWK*LVLMALQLEMLIFLEVKVEQSAMHKLYNL 469
+++M + MTM M TMT +T T+ + +++M + ++ +FL VK + HK + +
Sbjct: 297 TMVMMLMMMTMTMTMTMTMTMT-MTMTMMMIMMMMVVAVDHTMFL-VKTTRLRRHKKHRV 354
Query: 470 *R 475
R
Sbjct: 355 IR 356
>SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)
Length = 249
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 131 Q*HQITLLPHKVDQRNENA*IHWKQVPLVLQKTNL*RYQTKMR 259
Q H+I+L HK R + + PL KT L +Y+T +R
Sbjct: 103 QQHKISLQQHKTRLRQHKTPLRQHKTPLRQHKTPLRQYKTPLR 145
>SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 456 LCIADCSTFTSRNINISSCRAIKTS-HFHIRIVLS-VISFVI 337
LC+ STFT +I+I C A++ + I + V+SF++
Sbjct: 63 LCLCAVSTFTITSISIDRCLAVRLKMDYPITVTFKRVVSFIV 104
>SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)
Length = 722
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 372 IRIVLSVISFVIVRAIFIVIPHTLINKLWFHFG 274
I V+ +I I+ I I+I +IN+L+ H G
Sbjct: 684 IVFVIIIIIITIITTIIIIITIAIINRLYHHHG 716
>SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 1163
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 172 AKRKCVDPLEAGPSGSAKDEFVTIPDE 252
A+ K D + P+GS E +T+PD+
Sbjct: 745 ARHKAADAISRHPTGSTTPEMMTLPDD 771
>SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 325
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 172 AKRKCVDPLEAGPSGSAKDEFVTIPDE 252
A+ K D + P+GS E +T+PD+
Sbjct: 234 ARHKAADAISRHPTGSTTPEMMTLPDD 260
>SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1229
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 172 AKRKCVDPLEAGPSGSAKDEFVTIPDE 252
A+ K D + P+GS E +T+PD+
Sbjct: 679 ARHKAADAISRHPTGSTTPEMMTLPDD 705
>SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 398
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 172 AKRKCVDPLEAGPSGSAKDEFVTIPDE 252
A+ K D + P+GS E +T+PD+
Sbjct: 172 ARHKAADAISRHPTGSTTPEMMTLPDD 198
>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1013
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 172 AKRKCVDPLEAGPSGSAKDEFVTIPDE 252
A+ K D + P+GS E +T+PD+
Sbjct: 93 ARHKAADAISRHPTGSTTPEMMTLPDD 119
>SB_54171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 172 AKRKCVDPLEAGPSGSAKDEFVTIPDE 252
A+ K D + P+GS E +T+PD+
Sbjct: 51 ARHKAADAISRHPTGSTTPEMMTLPDD 77
>SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 172 AKRKCVDPLEAGPSGSAKDEFVTIPDE 252
A+ K D + P+GS E +T+PD+
Sbjct: 209 ARHKAADAISRHPTGSTTPEMMTLPDD 235
>SB_47317| Best HMM Match : DNA_ligase_OB (HMM E-Value=2.2)
Length = 167
Score = 27.9 bits (59), Expect = 8.9
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 3/142 (2%)
Frame = -1
Query: 582 TISILFNTSPSCFCASCVVLRELKLTNKNAYLTAFVRYKLYNLCIADCSTFTSRNINISS 403
T++++ TS + A V +T NA+ VR +L LC A T T+ +++
Sbjct: 12 TVTVV-RTSVTLCNAYTVTATGKSVTRCNAHTVTAVR-ELVILCNA--YTVTAVRTSVTL 67
Query: 402 CRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVL---IFVWYRHK 232
C A + + L V A+ + + ++ F ++ L IF+W RH
Sbjct: 68 CNAYTVTAVRTSVTLCNAYTVTTLAVRKIGTIPVTGRIIVRFRWKTVFLPFRIFLWVRHA 127
Query: 231 FVFCRTRGTCFQWIYAFSFRWS 166
+ T F+ Y S R S
Sbjct: 128 AECRSNQSTVFRHCYPASQRQS 149
>SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8)
Length = 420
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 172 AKRKCVDPLEAGPSGSAKDEFVTIPDE 252
A+ K D + P+GS E +T+PD+
Sbjct: 272 ARHKAADAISRHPTGSTTPEMMTLPDD 298
>SB_32624| Best HMM Match : rve (HMM E-Value=0.00042)
Length = 415
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 172 AKRKCVDPLEAGPSGSAKDEFVTIPDE 252
A+ K D + P+GS E +T+PD+
Sbjct: 93 ARHKAADAISRHPTGSTTPEMMTLPDD 119
>SB_32458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 352 YGEDDSNMEMTGFDGSATGDVNISG-GEGGAVGDAQVV 462
YG D N++ G DG GD + G G+G GD +++
Sbjct: 114 YGGDGDNIDDDGDDGGGDGDGDGDGDGDGDGDGDNRLM 151
>SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18)
Length = 838
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 172 AKRKCVDPLEAGPSGSAKDEFVTIPDE 252
A+ K D + P+GS E +T+PD+
Sbjct: 286 ARHKAADAISRHPTGSTTPEMMTLPDD 312
>SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)
Length = 1502
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 172 AKRKCVDPLEAGPSGSAKDEFVTIPDE 252
A+ K D + P+GS E +T+PD+
Sbjct: 999 ARHKAADAISRHPTGSTTPEMMTLPDD 1025
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.132 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,057,527
Number of Sequences: 59808
Number of extensions: 338272
Number of successful extensions: 1281
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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