Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0128
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    27   0.24 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.96 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.0  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = -1

Query: 501 KNAYLTAFVRYKLYNLCIADCS-----TFTSRNINISSCRAIKTSHFHIRIVLSVISFVI 337
           KN  L A+VR+KL   CI   S      +TS+N N   C     +    +I ++ I+F I
Sbjct: 54  KNNLLNAYVRFKLVTDCIFVTSEPGYFLYTSKNDNEEVCGIYFLAEPDQKIEINFITFDI 113


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 420 NINISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLI 298
           N  +S  R  +++  H   ++  +SF IV   +I+I  TL+
Sbjct: 388 NSEVSKSRTKESAWRHFAAIIEWLSFFIVIFTYIIILITLV 428


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 509  SLSSRRTTQEAQKQDGDV 562
            S+SSRR  Q  Q+  GDV
Sbjct: 1763 SVSSRRRQQRKQQTPGDV 1780


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 509  SLSSRRTTQEAQKQDGDV 562
            S+SSRR  Q  Q+  GDV
Sbjct: 1759 SVSSRRRQQRKQQTPGDV 1776


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
          protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/11 (72%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = -2

Query: 47 CLCCDDL-GPG 18
          C CCD+L GPG
Sbjct: 13 CWCCDNLGGPG 23


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 257 SSSSGIVTNSSFAEPEGPASSGSTHFRFAGPLCEEEELFDAIDGL 123
           SSS    + SSF     P S GS ++     L   ++L D I+ L
Sbjct: 88  SSSPSPSSPSSFFSSVSPTSLGSENYTGISDLFVFDDLNDYINRL 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,951
Number of Sequences: 438
Number of extensions: 3066
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)