Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0127
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.9  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 555 LSNESPHQNPRLSWNRTXNNXTI*KXCAXIXYN 457
           LSN++ H N    +N   NN      C  + YN
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYN--NNCKKLYYN 115


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 555 LSNESPHQNPRLSWNRTXNNXTI*KXCAXIXYN 457
           LSN++ H N    +N   NN      C  + YN
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYN--NNCKKLYYN 115


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 555 LSNESPHQNPRLSWNRTXNNXTI*KXCAXIXYN 457
           LSN++ H N    +N   NN      C  + YN
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYN--NNCKKLYYN 115


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 169 YSKCRRWKFMVGARVVYXVGDGGSVTSXP 83
           YS+ RR K + G  +V      G++TS P
Sbjct: 146 YSRRRRSKRLAGLMIVAVWVLAGAITSPP 174


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 38  PARGAPCRSTNEALARRGRXGTTVA 112
           PA G P  +T   L      GTTVA
Sbjct: 444 PAHGLPPSATRYDLGAVATVGTTVA 468


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,182
Number of Sequences: 438
Number of extensions: 1941
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)