Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0123
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...   241   5e-65
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    27   2.7  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    27   2.7  
SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    27   2.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   4.7  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   4.7  
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    26   4.7  
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    26   6.3  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   8.3  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   8.3  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    25   8.3  

>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score =  241 bits (591), Expect = 5e-65
 Identities = 107/183 (58%), Positives = 139/183 (75%)
 Frame = +1

Query: 166 PRXQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPEC 345
           P  Q +I++FR +HG   +GEVT++ MYGG RG++ L+WE SVLD +EGIRFRG +IPEC
Sbjct: 51  PEKQAEIKKFRAEHGQDVIGEVTINQMYGGARGVRSLIWEGSVLDPNEGIRFRGYTIPEC 110

Query: 346 QQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAELPAHVVTMLNNMPGK 525
           Q+ LP +  G++PLPE LFWLLVTG+IPT +Q +ALS +WAAR++LP  V  +++  P  
Sbjct: 111 QKLLPSSPNGKQPLPESLFWLLVTGEIPTLSQVQALSADWAARSQLPKFVEELIDRCPPT 170

Query: 526 LHPMSQFSAAVTALNSESKFAKAYSXGVHKSKYWEYVYEDTMNLIAKLPVIAATIYRNVY 705
           LHPM+QFS AVTAL  +S FAKAY  G++K  YW+Y YED M+LIAK   IA  IYRN+Y
Sbjct: 171 LHPMAQFSLAVTALEHDSAFAKAYERGMNKHDYWKYEYEDCMDLIAKTVPIAGRIYRNLY 230

Query: 706 RDG 714
           RDG
Sbjct: 231 RDG 233


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 322 RGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIP 429
           +G  +PE +  LP    G    P G+FWL  TG+ P
Sbjct: 377 KGRPVPEAR--LPSMMIGCIVFPIGIFWLAWTGNYP 410


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 225 SDFSGTMLLSEFADLLLXPWESFPGEYFLNSSVQRLDLEVELSQ 94
           S F G++L+S  AD ++  W+    EY +    + L+  VE  Q
Sbjct: 599 SRFDGSLLVSGGADAVVSVWKDVTEEY-IAKQAEELERRVEAEQ 641



 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 267 DSTHATVHHINCDLSDFSGTMLLSEFADLLLXPWESFPGEYFL 139
           D+TH+  + I   +  FS   LLS  +DL L   +  PGE F+
Sbjct: 273 DTTHSETNAI-IQVVPFSENTLLSVHSDLSLLLRKRVPGEGFI 314


>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +1

Query: 124 LNRRI*KVFSRKRFPRXQEKIREFRKKHGSTKVGEVTVD 240
           +++R+  V  +KR PR  ++I  F +KH  TK  EV VD
Sbjct: 21  MHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTK--EVRVD 57


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 311  PSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 207
            P S+    VS TRP IP+ PP   +  +S  +  P
Sbjct: 1056 PVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRP 1090


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 353 CCWHSGMDRP--RKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 207
           C W    DRP  R + PSSA+ T      PL   + PY+ S   SPT++ P
Sbjct: 51  CIWP---DRPNMRGKKPSSAART----LSPLTGIVQPYLGSHPFSPTILSP 94


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 430 TEAQAKALSKEWAARAELPAHVVTMLNNMPGKLHP 534
           T A+ K  +K    R  +P H +T L N+  KL+P
Sbjct: 69  TSAEKKRGAKPQMRRVPIPPHRMTPLRNVWPKLYP 103


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
 Frame = +2

Query: 263 ESKVWFGKPLCWM-----PMKES-VSVVYPSLS---ANSNCPRLRVEKNHYPKVFSGFSS 415
           E++ + GK +C++     P++ S + V++ ++S    NS   R R   N  PK F     
Sbjct: 41  EAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLR 100

Query: 416 LAIYP 430
           + +YP
Sbjct: 101 VMLYP 105


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 156  PGEYFLNSSVQRLDLEVELSQSDMLSA 76
            P E + N  VQ+ DLE EL + D+L+A
Sbjct: 1069 PSEMYRNHLVQKADLEKELPE-DVLNA 1094


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -1

Query: 285 FPNQTFDSTHAT--VHHINCDLSDFSGTMLLSEFADLLLXPWESFPGEY 145
           F N    S ++T   + +  D +DF   +LL    D    PW S P E+
Sbjct: 115 FENSGLGSKYSTEIANGVYIDENDFDDDLLLENDIDQKPIPWSSSPIEH 163


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 625 WEYVYEDTMNLIAKLPVIAATIYRN 699
           W   Y+D  N +AK+ V   TIY++
Sbjct: 430 WSNTYKDLPNKLAKVKVSDRTIYKS 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,401
Number of Sequences: 5004
Number of extensions: 60572
Number of successful extensions: 214
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)