Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0123
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 231 3e-61
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849... 231 4e-61
02_02_0178 + 7490447-7490659,7490996-7491112,7491337-7491517,749... 44 1e-04
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 29 2.8
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 29 2.8
02_02_0654 - 12662931-12663200,12663296-12663550,12664097-126642... 29 3.7
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 29 4.9
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001... 28 6.5
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576... 28 6.5
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 28 6.5
02_04_0607 - 24302582-24303075,24303150-24304197 28 6.5
09_06_0002 + 20121846-20123308,20123420-20123426 28 8.6
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 28 8.6
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 231 bits (566), Expect = 3e-61
Identities = 100/186 (53%), Positives = 138/186 (74%)
Frame = +1
Query: 166 PRXQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPEC 345
P Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD DEGIRFRGLSIPEC
Sbjct: 49 PEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMTGMLWETSLLDPDEGIRFRGLSIPEC 108
Query: 346 QQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAELPAHVVTMLNNMPGK 525
Q+ LP A EPLPEGL WLL+TG +PT+ Q ALSKE A+R+ +P HV ++ +P
Sbjct: 109 QKVLPTAVKDGEPLPEGLLWLLLTGKVPTKEQVDALSKELASRSSVPGHVYEAIDALPVT 168
Query: 526 LHPMSQFSAAVTALNSESKFAKAYSXGVHKSKYWEYVYEDTMNLIAKLPVIAATIYRNVY 705
HPM+QF+ V AL ES+F KAY G+ KSK+WE YED +NLIA+LP +A+ +YR ++
Sbjct: 169 AHPMTQFTTGVMALQVESEFQKAYDKGMSKSKFWEPTYEDCLNLIARLPAVASYVYRRIF 228
Query: 706 RDGKGI 723
+ GK I
Sbjct: 229 KGGKTI 234
>11_05_0092 +
18984571-18984621,18984717-18984779,18984957-18984998,
18985560-18985625,18985728-18985793,18986277-18986390,
18986592-18986655,18987399-18987481,18987703-18987752,
18987844-18987921,18988020-18988148,18988244-18988286,
18988987-18989073,18989217-18989318,18989556-18989663,
18989750-18989800,18989886-18989959,18990079-18990130,
18990216-18990311
Length = 472
Score = 231 bits (565), Expect = 4e-61
Identities = 100/186 (53%), Positives = 138/186 (74%)
Frame = +1
Query: 166 PRXQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPEC 345
P Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD +EGIRFRGLSIPEC
Sbjct: 49 PEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMIGMLWETSLLDPEEGIRFRGLSIPEC 108
Query: 346 QQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAELPAHVVTMLNNMPGK 525
Q+ LP A G EPLPEGL WLL+TG +PT+ Q ALSKE R+ +P HV ++ +P
Sbjct: 109 QKVLPTAIKGGEPLPEGLLWLLLTGKVPTKEQVDALSKELVTRSSVPGHVYKAIDALPVT 168
Query: 526 LHPMSQFSAAVTALNSESKFAKAYSXGVHKSKYWEYVYEDTMNLIAKLPVIAATIYRNVY 705
HPM+QF+ V AL ES+F KAY G+ KSK+WE YED +NLIA+LP +A+ +YR ++
Sbjct: 169 AHPMTQFTTGVMALQVESEFQKAYDKGMPKSKFWEPTYEDCLNLIARLPPVASYVYRRIF 228
Query: 706 RDGKGI 723
+DGK I
Sbjct: 229 KDGKTI 234
>02_02_0178 +
7490447-7490659,7490996-7491112,7491337-7491517,
7491594-7491679,7491785-7491889,7492059-7492121,
7492404-7492513,7492644-7492763,7492833-7492908,
7493254-7493327,7493474-7493594,7495559-7495656,
7495735-7495858,7496373-7496504
Length = 539
Score = 44.0 bits (99), Expect = 1e-04
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Frame = +1
Query: 295 LDADEGI-RFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAA 471
+D DEGI R+RG I E L ++ E + +LL+ G +PT++Q +
Sbjct: 140 IDGDEGILRYRGYPIEE----LAESSSFVE-----VAYLLMYGSLPTQSQLAGWEFAISQ 190
Query: 472 RAELPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSXGVHKSKYWEYVYEDTM 651
+ +P ++ ++ MP HPM ++A++ L+ A G K + + +
Sbjct: 191 HSAVPQGLLDIIQAMPHDAHPMGALASAMSTLSVFHPDANPALRGQDLYKSKQVRDKQIV 250
Query: 652 NLIAKLPVIAATIY 693
++ K P IAA Y
Sbjct: 251 RVLGKAPTIAAAAY 264
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 463 WAARAELPAHVVTMLNNMPGKLHP--MSQFSAAVTALNSESKFAKAYSXGVHKSKYWEYV 636
W E A + + + KLHP +++ ++ LN + Y VH S YWE+
Sbjct: 209 WDILCEEAAEIASNTCSGVAKLHPTTIAKCWLYISKLNFVGRDIIDYDWAVHASNYWEWE 268
Query: 637 YEDTM 651
D +
Sbjct: 269 IADAL 273
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 463 WAARAELPAHVVTMLNNMPGKLHP--MSQFSAAVTALNSESKFAKAYSXGVHKSKYWEYV 636
W E A + + + KLHP +++ ++ LN + Y VH S YWE+
Sbjct: 209 WDILCEEAAEIASNTCSGVAKLHPTTIAKCWLYISKLNFVGRDIIDYDWAVHASNYWEWE 268
Query: 637 YEDTM 651
D +
Sbjct: 269 IADAL 273
>02_02_0654 -
12662931-12663200,12663296-12663550,12664097-12664268,
12664354-12664581,12664727-12664860,12665018-12665101,
12665332-12665538,12665641-12665973,12666175-12666281,
12666439-12666593,12666778-12666810,12666924-12666972,
12667152-12667312,12667413-12668313,12668391-12668481,
12668558-12668749
Length = 1123
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -3
Query: 229 PLRL*WNHASFGI-RGSSLVXLGIFSWRI-LFKFVCSALRPRSRTVAVGHAFCNSTSLED 56
PL L +NH ++ + S + G+ R+ L + A RP T VG + T+L D
Sbjct: 547 PLSLCFNHLNYYVDMPSEMKQQGLMESRLQLLSDISGAFRPGLLTALVGVSGAGKTTLMD 606
Query: 55 VILNR 41
V+ R
Sbjct: 607 VLAGR 611
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +2
Query: 527 CIPCHSSRLPSPHSTVNLNSLKPTQXACTNPSI-GSTCT 640
C +SR SPH+T L + C NP G C+
Sbjct: 1660 CSQLRTSRFTSPHATDELKDTREAPKPCCNPQTEGGLCS 1698
>07_03_0535 -
19198130-19198139,19199901-19199995,19200095-19200154,
19200241-19200349,19200438-19200604,19200694-19200813,
19200901-19200987,19201068-19201196,19201284-19201362,
19201451-19201530,19201646-19201726,19201812-19201874,
19201963-19202139,19202381-19202476,19202610-19202729,
19202825-19202933,19203016-19203235,19203320-19203405,
19203491-19203552,19203649-19203685,19203790-19203848,
19203952-19204037,19204142-19204313
Length = 767
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 314 IPSSASSTEVSQTRPLIPRMPPYIISTVTSPT 219
+PS+A S +V+ + P I R PP + + T PT
Sbjct: 162 VPSNAKSADVASSTPKIQRPPP-VKAVTTVPT 192
>04_03_0543 +
16955440-16955518,16956623-16956726,16957456-16957655,
16958554-16958654,16959408-16959603,16960243-16960324,
16960402-16960668,16960790-16960917,16961285-16961465
Length = 445
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 409 LVTGDIPTEAQAKALSKEWAARAELPAHVVTMLNN-MPGKLHPMSQF 546
L+ GD+ A A++ +W RA++ HV + N +P L S F
Sbjct: 254 LIPGDMVINAMMAAINSQWNKRAQVIYHVTSAHQNPLPVSLIEESMF 300
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = -2
Query: 335 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 207
MDR R+R P S S S P PR P + V P L EP
Sbjct: 1 MDRLRRRNPKSVPSGSSSMKPPRPPRGPSFQAPAVPRP-LPEP 42
>02_04_0607 - 24302582-24303075,24303150-24304197
Length = 513
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +3
Query: 231 HS*YDVRWHAWNQRSGLGNLCAGCR*RNPFPWSIHP*VPTATAQG*GW 374
H DVR H R G G AG + PF W+ HP + T A+ GW
Sbjct: 85 HGHVDVRHH---HRGGAG---AGGAQQGPFQWADHPRLVTEAAEN-GW 125
>09_06_0002 + 20121846-20123308,20123420-20123426
Length = 489
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +2
Query: 290 LCWMPMKESVSVVYPSLSANSNCPRLRVEKNHYPK--VFSGFSS 415
+C P+++S S+ +PS S+++NC + +PK V GFS+
Sbjct: 228 VCLSPLQQS-SLAHPSPSSSTNCSLWMTKSAIFPKEVVTRGFSA 270
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 339 RDG*TTETDSFIGIQHRGFPNQTFDSTHATVHH 241
+DG D IG++ + FP + D T A HH
Sbjct: 407 KDGELDSKDLDIGLKRKPFPRKMEDPTSADAHH 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,442,884
Number of Sequences: 37544
Number of extensions: 430502
Number of successful extensions: 1278
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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