Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0123
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.) 202 2e-52
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 30 2.2
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022) 30 2.2
SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4) 30 2.2
SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05) 29 3.8
SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34) 28 8.8
SB_39652| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 28 8.8
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18) 28 8.8
>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 202 bits (494), Expect = 2e-52
Identities = 97/154 (62%), Positives = 118/154 (76%)
Frame = +1
Query: 256 MRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTE 435
MRGIKGLV ETS+LD +E LPKA GG+EPLPEG+FWLL+TG+IPT+
Sbjct: 1 MRGIKGLVTETSLLDPEE--------------LLPKADGGKEPLPEGIFWLLMTGEIPTK 46
Query: 436 AQAKALSKEWAARAELPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSXGVHK 615
Q LSKEWAA+A+LP HVV MLNN P LHPMSQFSAA+TA+N+ESKF +AY+ GV+K
Sbjct: 47 QQVDNLSKEWAAKADLPQHVVQMLNNFPDTLHPMSQFSAAITAMNTESKFVQAYNKGVNK 106
Query: 616 SKYWEYVYEDTMNLIAKLPVIAATIYRNVYRDGK 717
+YW Y ++D M LIAKLP +AA IYRN+Y+DGK
Sbjct: 107 KEYWMYCFDDAMELIAKLPTLAAYIYRNLYKDGK 140
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -2
Query: 335 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIIS 237
M P + + ++A+ TE++ T+PL+P P ++S
Sbjct: 366 MPAPTESVVTTATPTEIAVTKPLLPPKPSGLVS 398
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 151 SRKRFPRXQEKIREFRKKHGSTKVGEVTVD 240
S +R QEKI+E RK +GS K T+D
Sbjct: 922 SSERIRLLQEKIKEMRKLYGSLKAEVATID 951
>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
Length = 1671
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 286 TSVLDADEGIRFRGLSIPECQQQLPKAKGG 375
+S+ DA IRF LS+PE + + PK+ G
Sbjct: 872 SSIFDALRNIRFPRLSLPELEGRFPKSSPG 901
>SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
Length = 407
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -2
Query: 335 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIIS 237
M P + + ++A+ TE++ T+PL+P P ++S
Sbjct: 118 MPAPTESVVTTATPTEIAVTKPLLPPKPSGLVS 150
>SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)
Length = 430
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 232 TVDMMYGGMRG-IKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPE 393
TVD++Y +RG LV + LD E ++F L +CQ P A+ + LP+
Sbjct: 254 TVDLLYLFVRGDFTPLVSCDACLDL-EVLQFMNLDFIQCQPTAPDAQDSKHTLPD 307
>SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 268 KGLVWETSVLDADEGIRFRGLSIPECQQQL 357
+GL W+ S D D FRGL+IP C ++
Sbjct: 178 RGLPWQAS--DQDVANFFRGLNIPSCVSRM 205
>SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
Length = 264
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = -3
Query: 160 FSWRILFKFVC----SALRPRSRTVAVGHAFCNSTSLEDVIL 47
F W +L FV S + PRSR G C STS+ ++L
Sbjct: 135 FDWMLLTCFVIDKLESMITPRSRAAWAGLMKCPSTSISGIML 176
>SB_39652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 12 SLRSAALKMALFRITSSRLVELQKACPTATVLLR 113
SLR A+ ++ RI S +V L+KA +LLR
Sbjct: 33 SLRKASERVVNLRIASESMVNLRKASERMVILLR 66
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = -2
Query: 332 DRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEPCF 201
D+P IPS SST S MPP +ST T P P F
Sbjct: 789 DQPIPAIPSLMSSTLTSSISTTSTGMPPASLSTPT-PFFTHPGF 831
>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
Length = 1719
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 337 PECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAAR 474
P C+ LPK +G +P G W+LV G+ +A K+ W ++
Sbjct: 568 PACRM-LPK-EGEPISIPNGTPWILVEGNSAIQANPKSKINCWISK 611
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,148,974
Number of Sequences: 59808
Number of extensions: 479144
Number of successful extensions: 1523
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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