Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0123
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical pr...   280   8e-76
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    30   1.5  
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U28409-1|AAC46592.3|  231|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    28   5.9  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    28   5.9  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical
           protein T20G5.2 protein.
          Length = 468

 Score =  280 bits (686), Expect = 8e-76
 Identities = 123/189 (65%), Positives = 152/189 (80%)
 Frame = +1

Query: 157 KRFPRXQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSI 336
           K+ P    K++ FR +HGST V  V +DM+YGGMR +KG+V ETSVLD +EGIRFRG SI
Sbjct: 41  KKIPAHNAKVKSFRTEHGSTVVQNVNIDMIYGGMRSMKGMVTETSVLDPEEGIRFRGYSI 100

Query: 337 PECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAELPAHVVTMLNNM 516
           PECQ+ LPKAKGGEEPLPE ++WLL TGD+P+EAQ  A++KEW ARA+LP HVV ML+N 
Sbjct: 101 PECQKLLPKAKGGEEPLPEAIWWLLCTGDVPSEAQTAAITKEWNARADLPTHVVRMLDNF 160

Query: 517 PGKLHPMSQFSAAVTALNSESKFAKAYSXGVHKSKYWEYVYEDTMNLIAKLPVIAATIYR 696
           P  LHPM+QF AA+ ALN+ESKFA AY+ GV K+ YWEY YED+M+L+AKLP +AA IYR
Sbjct: 161 PDNLHPMAQFIAAIAALNNESKFAGAYARGVAKASYWEYAYEDSMDLLAKLPTVAAIIYR 220

Query: 697 NVYRDGKGI 723
           N+YRDG  +
Sbjct: 221 NLYRDGSAV 229


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 326 PRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 207
           P +  P    ST   Q RP  PR  PY+  + T+   +EP
Sbjct: 226 PARPAPYIEPSTAKPQPRPQPPRTRPYVAPSTTTQRYIEP 265


>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
           protein Y87G2A.5 protein.
          Length = 1050

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 364 AKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAEL 483
           A G E+PLPE  +W  V+     EA AKA  K     AE+
Sbjct: 521 ADGREQPLPEENYW--VSARTEQEALAKAAQKFQVPEAEI 558


>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical
           protein T21B10.3 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 353 CCWHSG-MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEPCFFRN 192
           C W S  +  P+K++PS    T   Q      ++ P  +STV+       C+FR+
Sbjct: 585 CSWFSSSLQNPKKQVPSGVYKTIAEQHLDEFEQIKPEEVSTVSD------CYFRS 633


>U28409-1|AAC46592.3|  231|Caenorhabditis elegans Hypothetical
           protein T25D10.2 protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -1

Query: 312 SFIGIQHRGFPNQTFDSTHATVHH---INCDLSDFSGTMLLSEFAD 184
           S I   +  FPN T   +H + HH     C++++F+G    + F D
Sbjct: 173 SHISSDYVAFPNGTLIISHFSYHHFGYFECNINNFAGHASTNTFID 218


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 281 QTRPLIPRMPPYIISTVTSPTLVEPCFFRNSR 186
           QTRP  P++PP  I+     T V+P FF+ +R
Sbjct: 365 QTRP--PQLPPVQITQPPIQTPVQPIFFQTTR 394


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 281 QTRPLIPRMPPYIISTVTSPTLVEPCFFRNSR 186
           QTRP  P++PP  I+     T V+P FF+ +R
Sbjct: 462 QTRP--PQLPPVQITQPPIQTPVQPIFFQTTR 491


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 127 SALRPRSRTVAVGHAFCNSTSLEDVILNRAIFKAAERKLP-HK 2
           S  R +S+TVA  H +CN+    + +L  AI +  ++K P HK
Sbjct: 34  SGFRRKSKTVAFFHPYCNAGGGGERVLWAAI-RTMQKKFPDHK 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,747,689
Number of Sequences: 27780
Number of extensions: 347501
Number of successful extensions: 1034
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)