Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0123
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.96 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 474 PRCPFFRQRFSLRFGGYIASDEKPEK 397
           P+CP FR+  S    G  +  EKP+K
Sbjct: 566 PQCPRFRKLDSPSDSGIESGTEKPDK 591


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 219 FSGTMLLSEFADLLLXPWESF--PGEYF 142
           F G  +  E++DL+   W +F  PG++F
Sbjct: 29  FLGWNVPPEYSDLVRPHWRAFPAPGKHF 56


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 219 FSGTMLLSEFADLLLXPWESF--PGEYF 142
           F G  +  E++DL+   W +F  PG++F
Sbjct: 29  FLGWNVPPEYSDLVHPHWRAFPAPGKHF 56


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 609 AQIQVLGVRVRRHNEPYRETARDRRHYLSQRVP 707
           +Q +++  R RR+++ +  +  DRR   S R P
Sbjct: 12  SQRKIIRSRSRRYSKRFSSSIVDRRSPSSSRSP 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,425
Number of Sequences: 438
Number of extensions: 4361
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)