Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0122
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    30   0.32 
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    27   3.0  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   9.1  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = -3

Query: 559 TIQGHSFSSALCPPTMRSSS*TSYVLPYAVGPFFIPQAPL 440
           T+  HSF+S   PP + S+S  ++ LP AV P    QAPL
Sbjct: 235 TVGSHSFTSGTHPPIVSSNS--AFTLPNAVTP--AAQAPL 270


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 633 HCVAHMTXWDVARLTARLGDYNIRNQH 713
           H +AHM  ++ A     +GD +I N H
Sbjct: 544 HMIAHMCGYEAAEFVHVMGDCHIYNDH 570


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +1

Query: 211 YRPNGRPHFRLYLPTRLTTQRQPIHLQWVSRNHHKLNQHHPLLLGEQSRPVPPS 372
           Y P   P+   Y P    T   P   Q  S+  +   QH P  L EQ  P+P S
Sbjct: 725 YSPVPFPYNTSYPPYMSPTSNMPQAFQAYSQYPY---QHPPFPLSEQMLPLPTS 775


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,258
Number of Sequences: 5004
Number of extensions: 51031
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)