Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0122
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0219 - 19433053-19433110,19433243-19433547                       31   1.3  
03_05_0943 + 29034398-29034512,29035059-29035508,29035654-29035826     29   4.1  
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758...    29   5.4  
07_01_0975 + 8223269-8224354                                           29   5.4  
12_01_0085 - 689489-689935                                             28   9.5  
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172...    28   9.5  
06_01_0029 - 288676-289287,289441-289733,289842-290031                 28   9.5  

>01_05_0219 - 19433053-19433110,19433243-19433547
          Length = 120

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +3

Query: 399 AFPTQPSKPSQP-AVSGACGMKNGPTAYGSTYDVQDEERIVGGHNAELNEWPWIVAL 566
           A   QP   + P A SG  G  NGP A G    +       GG    + +W WI  L
Sbjct: 50  ALVRQPGGGALPFASSGGGGGDNGPAAGGGDGGILGSSSGAGGALLSIRQWRWIWVL 106


>03_05_0943 + 29034398-29034512,29035059-29035508,29035654-29035826
          Length = 245

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +3

Query: 468 PTAYGSTYDVQDEERIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDDKHVISAAHCVAH 647
           P    S +  ++EE ++  H A  N W  I  LF  GR     ++ +  HVI A  C   
Sbjct: 52  PRINRSPFTEEEEELLLASHRAHGNRWAVIARLF-PGR--TDNAVKNHWHVIMARRCRER 108

Query: 648 M 650
           M
Sbjct: 109 M 109


>08_01_0783 +
           7585326-7585477,7586420-7586589,7586687-7586801,
           7586887-7587055,7587185-7587319,7587409-7587728,
           7587992-7588127,7588224-7588472,7588567-7588787,
           7588906-7589164,7589264-7589971,7590095-7590424
          Length = 987

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
 Frame = -2

Query: 611 VVNDRSSAKLTPSIKQSYDPGPFV*LCVMSTNNALFILNIVC--ATVCRWSILHTASAAD 438
           +++  +S +LT     S++      L + +   AL + N VC  AT+C  +I+H  +  D
Sbjct: 335 ILSGETSIQLTLQFLYSHNRSDL--LILKTIKQALEMRNSVCHSATICSNAIMHAGTTVD 392

Query: 437 CRLR----WLAR 414
             LR    WL+R
Sbjct: 393 TFLRENLEWLSR 404


>07_01_0975 + 8223269-8224354
          Length = 361

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 417 SKPSQ-PAVSGACGMKNGPTAYGST 488
           S P++ P+ SGA G   GP++YGST
Sbjct: 309 SGPAEGPSPSGAAGPAEGPSSYGST 333


>12_01_0085 - 689489-689935
          Length = 148

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 465 HSSYRKRR*LQAEMACSAALGMLE 394
           H+ +R+RR   +EM CS  LG LE
Sbjct: 59  HAHHRRRRDESSEMECSICLGELE 82


>11_08_0081 -
           28216179-28216381,28216590-28216657,28217131-28217298,
           28217370-28217436,28217509-28217576,28218256-28218420,
           28218490-28218556,28218629-28218696,28219855-28219992,
           28220189-28220353,28221227-28221304,28221380-28221532,
           28222753-28222823,28223077-28223203,28223306-28223565,
           28223679-28223842,28224287-28224450,28225873-28226159
          Length = 826

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 65  GRYPSSARTGCAKIRIIAGSTTSDTCLRRSCFCIDSSVAF*RY 193
           GR P S+R GCAK +  A  +   + L RSC   D  V F ++
Sbjct: 378 GRSPPSSRHGCAKDKEGAAVSLFVSNLPRSCRPEDVQVPFQKF 420


>06_01_0029 - 288676-289287,289441-289733,289842-290031
          Length = 364

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 217 PNGRPHFRLYLPTRLTTQRQPIHLQWVSRNHHKLNQHH 330
           P    H    +P  L +     H   VS +HH++N HH
Sbjct: 248 PAAGHHLLNTMPHDLESSTSSFHSLLVSPDHHQINMHH 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,746,608
Number of Sequences: 37544
Number of extensions: 366074
Number of successful extensions: 1104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)