Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0122
(774 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33589| Best HMM Match : Trypsin (HMM E-Value=0) 62 4e-10
SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 1e-09
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 8e-09
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 58 1e-08
SB_9601| Best HMM Match : Trypsin (HMM E-Value=0) 57 2e-08
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0) 54 1e-07
SB_46573| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22) 53 2e-07
SB_10167| Best HMM Match : Trypsin (HMM E-Value=0) 53 3e-07
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0) 52 5e-07
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 5e-07
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0) 51 1e-06
SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0) 50 2e-06
SB_28897| Best HMM Match : Trypsin (HMM E-Value=0) 50 2e-06
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 50 3e-06
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 50 3e-06
SB_11317| Best HMM Match : Trypsin (HMM E-Value=3e-08) 49 4e-06
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0) 49 4e-06
SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08) 49 5e-06
SB_35844| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 48 8e-06
SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23) 48 8e-06
SB_20791| Best HMM Match : Trypsin (HMM E-Value=4.8e-12) 47 2e-05
SB_29414| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2) 46 3e-05
SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0) 46 3e-05
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0) 46 3e-05
SB_55505| Best HMM Match : Trypsin (HMM E-Value=0) 46 4e-05
SB_17803| Best HMM Match : SRCR (HMM E-Value=0) 45 8e-05
SB_33775| Best HMM Match : Trypsin (HMM E-Value=0.012) 45 8e-05
SB_50961| Best HMM Match : Trypsin (HMM E-Value=0) 44 1e-04
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 44 1e-04
SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08) 44 2e-04
SB_10327| Best HMM Match : Trypsin (HMM E-Value=0) 43 2e-04
SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_48048| Best HMM Match : Trypsin (HMM E-Value=3.64338e-44) 42 4e-04
SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0) 41 0.001
SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21) 40 0.002
SB_30267| Best HMM Match : Trypsin (HMM E-Value=0) 40 0.002
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.084
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028) 33 0.26
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 33 0.34
SB_133| Best HMM Match : Sushi (HMM E-Value=5e-40) 30 2.4
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_17196| Best HMM Match : Trypsin (HMM E-Value=0.027) 29 5.5
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0) 29 5.5
SB_11910| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 9.6
>SB_33589| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 289
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 450 CGMKNGPTAYGSTYDVQDEERIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDDKHVISA 629
CG + Y +RIVGG A WPW VAL G QFCG S++++ V++A
Sbjct: 33 CGKRLISKPYSYASGGGTRKRIVGGVEAAPGAWPWQVALLMNGTQFCGGSLVNENWVVTA 92
Query: 630 AHCVAHM-TXWDVARLTARLGDYNI 701
HC + + D A TA LG++++
Sbjct: 93 RHCFHELWSSMDTASWTASLGEHHL 117
>SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/61 (44%), Positives = 36/61 (59%)
Frame = +3
Query: 465 GPTAYGSTYDVQDEERIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDDKHVISAAHCVA 644
G T + ST Q +RIVGGH+ +PW V + G CG S+I +K V++AAHCV
Sbjct: 92 GRTRFNSTRRQQCRQRIVGGHDTVKGAYPWHVLIRKGGHVACGGSLISEKWVLTAAHCVT 151
Query: 645 H 647
H
Sbjct: 152 H 152
>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 58.0 bits (134), Expect = 8e-09
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +3
Query: 510 RIVGGHNAELNEWPW-IVALFNAGRQFCGXSIIDDKHVISAAHCVAHMTXWDVARLTARL 686
RIVGG A WPW ++ ++N+GRQFCG +++ + VI+AAHCV + A + RL
Sbjct: 630 RIVGGSTAPPGAWPWQVMLIYNSGRQFCGGTLVTPEWVITAAHCVVDK---NPASIQVRL 686
Query: 687 G 689
G
Sbjct: 687 G 687
>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 506
Score = 57.6 bits (133), Expect = 1e-08
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +3
Query: 405 PTQPSKPSQPAVSGACGMKNGPTAYGSTYDVQDEERIVGGHNAELNEWPWIVALFNA-GR 581
PT P A + P GS RIVGG A +N WPW L +A G
Sbjct: 224 PTPPPPVKTTAAPTPSPPQTPPPPTGSCGSKPSGTRIVGGTEAPVNGWPWQAMLRSAGGS 283
Query: 582 QFCGXSIIDDKHVISAAHCVAHMTXWDV 665
QFCG S+I + V++AAHC+ + D+
Sbjct: 284 QFCGGSLIHPEWVLTAAHCLENTQPSDI 311
>SB_9601| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 285
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +3
Query: 447 ACGMKNGPTAYGS-TYDVQDE-ERIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDDKHV 620
+CG+ + P S + V R+VGG A+ ++PW +AL +Q+CG +++ ++ V
Sbjct: 5 SCGVPSLPITKASRAFPVPRRFRRVVGGDEAKAGQFPWQIALLFKRQQYCGGALVHERWV 64
Query: 621 ISAAHCVAHMTXWDVARLTARLGDYNI 701
++ AHC T D LG+YN+
Sbjct: 65 VTGAHCFNPYTSEDPRDWNVTLGEYNL 91
>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 56.4 bits (130), Expect = 2e-08
Identities = 36/118 (30%), Positives = 57/118 (48%)
Frame = +3
Query: 405 PTQPSKPSQPAVSGACGMKNGPTAYGSTYDVQDEERIVGGHNAELNEWPWIVALFNAGRQ 584
P P P+ + G+K G Y + R++GG +A WPW +AL + G
Sbjct: 448 PNTPQPPTNRPTAPPGGLKCG-------YTPITQSRVIGGKDAIPGAWPWQIALKSRGNF 500
Query: 585 FCGXSIIDDKHVISAAHCVAHMTXWDVARLTARLGDYNIRNQHRNIAHRTKN*KNCXA 758
CG S++ V++AAHCVA + + A+ +G++N RN + + T N K A
Sbjct: 501 ICGGSLVSSTWVVTAAHCVARSS--NPAQYQIIVGEHN-RNVN-EVTEETLNVKKVIA 554
>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 55.2 bits (127), Expect = 6e-08
Identities = 39/102 (38%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Frame = +3
Query: 405 PTQPSKPSQPAVSGACGMKN-GPTAYGSTYDVQDEERIVGGHNAELNEWPWIVAL-FNAG 578
PT P P P G P A G + RIVGG A WPW L N G
Sbjct: 104 PTMPPTPPPPQTPAPPGPDTPAPPAPGGC-GAKPHTRIVGGTKAPPGAWPWQAMLRSNYG 162
Query: 579 RQFCGXSIIDDKHVISAAHCVAHMTXWDV-ARLTA--RLGDY 695
QFCG +++ + VI+AAHCV D R+ A R GDY
Sbjct: 163 GQFCGGTLVHPQWVITAAHCVYRRGPNDFKIRMGAHFRKGDY 204
>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 530
Score = 54.4 bits (125), Expect = 1e-07
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +3
Query: 405 PTQPSKPSQPAVSGACGMKNGPTAYGSTYDVQDEERIVGGHNAELNEWPWIVALFNAG-R 581
P P SG+CG K T RIVGG A +N WPW L +AG
Sbjct: 196 PVTTRAPITQPPSGSCGSKPSGT------------RIVGGTEAPVNGWPWQAMLRSAGGS 243
Query: 582 QFCGXSIIDDKHVISAAHCVAHMTXWDV 665
QFCG S+I + V++AAHC+ + D+
Sbjct: 244 QFCGGSLIHPEWVLTAAHCLENTQPSDI 271
>SB_46573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALFNA--GRQFCGXSIIDDKHVISAAHCV 641
RIVGG A +N WPW L + G QFCG S+ID V++AAHC+
Sbjct: 29 RIVGGTEAPINGWPWQAMLLRSPNGDQFCGGSLIDPGWVLTAAHCL 74
>SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)
Length = 231
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDDKHVISAAHCVAH 647
R+V G NA + WPW ++L G+ CG S+I + V++AAHCV H
Sbjct: 37 RVVNGANAPQHAWPWQISLRTNGQHICGGSLITPEWVLTAAHCVDH 82
>SB_10167| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 532
Score = 52.8 bits (121), Expect = 3e-07
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +3
Query: 504 EERIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDDKHVISAAHCV 641
+ R+V G NA + WPW ++L GR CG S+I + V++AAHCV
Sbjct: 78 QSRVVNGDNAAQHSWPWQISLRVNGRHICGGSLITPEWVLTAAHCV 123
>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 898
Score = 52.4 bits (120), Expect = 4e-07
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDDKHVISAAHCV 641
R+V G NA+ + WPW ++L GR CG S+I V++AAHCV
Sbjct: 31 RVVNGDNAQQHSWPWQISLRVNGRHICGGSLIAKDWVVTAAHCV 74
>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 968
Score = 52.0 bits (119), Expect = 5e-07
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +3
Query: 495 VQDEERIVGGHNAELNEWPWIVALFN-AGRQFCGXSIIDDKHVISAAHCVAHMTXWDVAR 671
V+ RIVGG A+ +WPW L + +G FCG S+I + V++A HCV+ D
Sbjct: 658 VRPSTRIVGGTAAKQGDWPWQAQLRSTSGFPFCGGSLIHPQWVLTATHCVSSRRPTD--- 714
Query: 672 LTARLGDYNIR 704
L RLG +N R
Sbjct: 715 LNIRLGAHNRR 725
Score = 32.3 bits (70), Expect(2) = 5e-04
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 558 VALFNAGRQFCGXSIIDDKHVISAAHCVA 644
+AL +G CG S++ V++AAHC+A
Sbjct: 83 IALERSGSFICGGSLVSPTWVVTAAHCIA 111
Score = 29.1 bits (62), Expect(2) = 5e-04
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 507 ERIVGGHNAELNEWPWIVA 563
+R++GG NA+ WPW V+
Sbjct: 28 QRVIGGVNAQSGAWPWQVS 46
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 52.0 bits (119), Expect = 5e-07
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +3
Query: 405 PTQPSKPSQPAVSGACGMKNGPTAYGSTYDVQDEERIVGGHNAELNEWPWIVALFN-AGR 581
P S P P +G CG K P RI+ G NA+ + WPW ++L +G
Sbjct: 82 PPPSSGPPLPPSNGKCGRK--PAG----------ARIINGQNAQPHSWPWQISLRGRSGF 129
Query: 582 QFCGXSIIDDKHVISAAHCV 641
CG S+I D+ V++AAHC+
Sbjct: 130 HTCGGSLISDRWVVTAAHCI 149
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +3
Query: 405 PTQPSKPSQPAVSGACGMK---NGPTAYGSTYDVQDEERIVGGHNAELNEWPWIVAL-FN 572
PT P P +G NGP + G RI+ G NA+ + WPW ++L
Sbjct: 390 PTNGPPPPPPPTNGPPPPPPPTNGPPSEGKCGRKPAGARIINGQNAQPHSWPWQISLRGR 449
Query: 573 AGRQFCGXSIIDDKHVISAA 632
+G CG S+I D+ V++AA
Sbjct: 450 SGFHTCGGSLISDRWVVTAA 469
>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 454
Score = 50.8 bits (116), Expect = 1e-06
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Frame = +3
Query: 405 PTQPSKPSQPAVSGACGMKNGPTAYGSTYDVQDEERIVGGHNAELNEWPW-IVALFNAG- 578
PT P P P+V CG++ P A RIVGG++A EWPW + +F
Sbjct: 188 PTSPPVPPVPSVPN-CGVR--PPA----------SRIVGGNDAMHGEWPWQAMLMFQTPL 234
Query: 579 --RQFCGXSIIDDKHVISAAHCVAHMTXWDVARLTARLGDYN 698
+QFCG +++ + V++A+HC+ + D LG +N
Sbjct: 235 GYKQFCGGALVHEDWVVTASHCINDIRPEDYKTHIISLGGHN 276
>SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 50.4 bits (115), Expect = 2e-06
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVAL-FNAGRQFCGXSIIDDKHVISAAHCVAHMTXWDV 665
RIVGG A+ WPW L + G FCG +++ + V++A+HCV +T D+
Sbjct: 248 RIVGGTTAQRGAWPWQAMLRYYNGNHFCGGTLVHPRWVVTASHCVHKLTTGDL 300
>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 636
Score = 50.4 bits (115), Expect = 2e-06
Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVAL-FNAGRQFCGXSIIDDKHVISAAHCVAHM 650
RI+ G +A+ N WPW+V + +N G CG +++ + V++AAHCV H+
Sbjct: 351 RIISGSDAQPNSWPWMVQINYNNGHH-CGGTLVSPQWVVTAAHCVDHV 397
>SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 974
Score = 50.4 bits (115), Expect = 2e-06
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDDKHVISAAHCVAHMTXWDVARLTARLG 689
RIVGG A+ WPW+ A++ G CG ++I V++AAHC + + + RLG
Sbjct: 723 RIVGGREAKAGAWPWLAAIYVKGSFRCGGALIARDWVVTAAHCFYYDGKIVPSDILVRLG 782
Query: 690 DYN 698
+++
Sbjct: 783 EHD 785
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 50.4 bits (115), Expect = 2e-06
Identities = 20/46 (43%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALFNAGRQF--CGXSIIDDKHVISAAHCV 641
RI+ G NA+ + WPW ++L GR+F CG ++I D+ V++A+HC+
Sbjct: 845 RIINGQNAQPHSWPWQISL-RQGRRFHLCGGALISDRWVVTASHCI 889
Score = 48.0 bits (109), Expect = 8e-06
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDDKHVISAAHCV 641
R++GG +A + WPW ++L G+ CG ++I V++A HCV
Sbjct: 435 RVIGGEDAAPHSWPWQISLRVRGKHMCGGTLISPDWVLTAGHCV 478
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 504 EERIVGGHNAELNEWPWIVAL-FNAGRQFCGXSIIDDKHVISAAHC 638
+ RIVGG A N WPW V L N R CG S+ID + V+++ HC
Sbjct: 247 QPRIVGGREASPNSWPWQVDLVVNGTRHNCGGSLIDKQWVVTSGHC 292
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALFNAGR-QFCGXSIIDDKHVISAAHCV 641
R++ G NA+ + WPW ++L GR CG ++I D+ V++A+HCV
Sbjct: 29 RVINGQNAQPHSWPWQISLRPYGRYHSCGGTLISDRWVVTASHCV 73
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALFNAGRQF--CGXSIIDDKHVISAAHCV 641
RIV G A + WPWI +L + CG ++I I+AAHCV
Sbjct: 325 RIVNGQEAVSHSWPWIASLRKGRSNYHTCGATLIRPGWAITAAHCV 370
>SB_11317| Best HMM Match : Trypsin (HMM E-Value=3e-08)
Length = 153
Score = 49.2 bits (112), Expect = 4e-06
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 444 GACGMKNGPTAYGSTYDVQDEERIVGGHNAELNEWPWIVALFNA-GRQFCGXSIIDDKHV 620
G G G + GS ++ RIVGG A N WPW L +A G FCG +++ + V
Sbjct: 2 GGGGGGGGGGSQGSC-GMKPSTRIVGGTAAPKNAWPWQAQLRSASGFPFCGGTLVHPRFV 60
Query: 621 ISAAHCVAHMTXWDVARLTARLG 689
++A+HC+ T + L RLG
Sbjct: 61 VTASHCIDKKTP---SSLRIRLG 80
>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 718
Score = 49.2 bits (112), Expect = 4e-06
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +3
Query: 504 EERIVGGHNAELNEWPWIVALF----NAGRQFCGXSIIDDKHVISAAHCVAHMTXWDVA- 668
E RIVGG A N WPW V + N +CG S+ID +++++HC T +++
Sbjct: 243 ESRIVGGREAPRNSWPWQVEIILKTPNLTTHYCGGSLIDPYWILTSSHC--FWTYNNIST 300
Query: 669 RLTARLGDYNIR 704
+ RLG++++R
Sbjct: 301 QFEIRLGEHDVR 312
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 558 VALFNAGRQFCGXSIIDDKHVISAAHCVAHMTXWDVARLTARLGDYN 698
V + N G +CG SIID V++A HCV + + R +++
Sbjct: 1 VTVNNTGH-WCGGSIIDPHWVVTAGHCVVPWSPRAIGTRVLRFAEHD 46
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 570 NAGRQFCGXSIIDDKHVISAAHC 638
N R CG S+ID + V+++ HC
Sbjct: 555 NGTRHNCGGSLIDKQWVVTSGHC 577
>SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08)
Length = 386
Score = 48.8 bits (111), Expect = 5e-06
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 480 GSTYDVQDEERIVGGHNAELNEWPWIVAL-FNAGRQFCGXSIIDDKHVISAAHCVA 644
G + ++ RIVGG A+ N WPW L +G +CG S+I + +++A HCV+
Sbjct: 43 GGSCGIRPHTRIVGGTAAKQNSWPWQAQLRTTSGFPYCGGSLIHPQWILTATHCVS 98
>SB_35844| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 249
Score = 48.0 bits (109), Expect = 8e-06
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +3
Query: 504 EERIVGGHNAELNEWPWIVALFNA-GRQF---CGXSIIDDKHVISAAHCVAHMTXWDVAR 671
E+R+V G E WPW V L + F CG ++ID + V++AAHCV DV+
Sbjct: 41 EKRVVSGSEVEPQSWPWQVHLLQSRDGSFLHKCGGALIDREWVVTAAHCVFQEP--DVSH 98
Query: 672 LTARLGDYN 698
LGD+N
Sbjct: 99 YKVILGDFN 107
>SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23)
Length = 299
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = +3
Query: 450 CGMKNGPTAYGSTYDVQDEERIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDDKHVISA 629
C + P+ S D RIVGG A + WPW V++ G CG S++ +++A
Sbjct: 10 CVLGVAPSEASSCGRRPDGVRIVGGDEAVPHSWPWQVSIRLKGSHICGGSLLSPLWLLTA 69
Query: 630 AHCV 641
AHCV
Sbjct: 70 AHCV 73
>SB_20791| Best HMM Match : Trypsin (HMM E-Value=4.8e-12)
Length = 227
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Frame = +3
Query: 504 EERIVGGHNAELNEWPWIVALFNAGRQ-----FCGXSIIDDKHVISAAHCVA 644
+ R++ G +A + WPW ++L ++ FCG S+ID + V++AAHCVA
Sbjct: 35 QSRVINGVDATAHAWPWQISLRMMSKKGDDYHFCGGSLIDSEWVLTAAHCVA 86
>SB_29414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 504 EERIVGGHNAELNEWPWIVALF-NAGRQFCGXSIIDDKHVISAAHC 638
+ RIVGG + WPW ALF N CG S+I + V++AAHC
Sbjct: 24 KRRIVGGIESANGAWPWQAALFLNGTHHRCGGSVIKSQWVVTAAHC 69
>SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2)
Length = 157
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +3
Query: 504 EERIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDDKHVISAAHC 638
++RIVGG + WPW VAL RQ C S+I+ + +I+A HC
Sbjct: 51 DKRIVGGVVSSEGLWPWQVALLLNDRQVCAGSLIEARWIITAGHC 95
>SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)
Length = 687
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDDKHVISAAHCV 641
R++GG A WPW V++ CG ++I K VI+AAHCV
Sbjct: 476 RVIGGEAARPYSWPWQVSVSMGKLHSCGGALISSKWVITAAHCV 519
>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
Length = 1019
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVAL-FNAGRQFCGXSIIDDKHVISAAHCVAHMTXWDVARLTARL 686
RIVGG A +WPW L G +CG S+I V++AAHC++ A + RL
Sbjct: 390 RIVGGAAANPGDWPWQAQLRTTTGFPYCGGSLIHSNWVLTAAHCISSKRP---AEVVVRL 446
Query: 687 GDYN 698
G ++
Sbjct: 447 GAHS 450
>SB_55505| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 292
Score = 45.6 bits (103), Expect = 4e-05
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDDKHVISAAHC 638
RI+GG + + + PW+VA+ Q CG S++ + +++AAHC
Sbjct: 40 RIMGGQRSTIEQHPWMVAMMLDSAQACGGSLVPEDWIVTAAHC 82
>SB_17803| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1428
Score = 44.8 bits (101), Expect = 8e-05
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 513 IVGGHNAELNEWPWIVALFNAGR-QFCGXSIIDDKHVISAAHCVAHMTXWDVARLTARLG 689
+VG + +WPW + N R FC +I +HVI+AAHC + D ++ RLG
Sbjct: 1088 LVGATPSPPEDWPWQTMILNRRRFPFCSGVLISARHVITAAHCFDRIIRTD--QIIVRLG 1145
Query: 690 DYNIRN 707
Y R+
Sbjct: 1146 AYIARS 1151
>SB_33775| Best HMM Match : Trypsin (HMM E-Value=0.012)
Length = 115
Score = 44.8 bits (101), Expect = 8e-05
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +3
Query: 495 VQDEERIVGGHNAELNEWPWIVAL-FNAGRQFCGXSIIDDKHVISAAHCVAHMTXWD-VA 668
++ RIVGG A+ +WPW L +G +CG S+I + +++A HCV V
Sbjct: 5 IRPNTRIVGGTAAKHGDWPWQAQLRTTSGFPYCGGSLIAPQWILTATHCVERKQASSIVI 64
Query: 669 RLTAR 683
RL AR
Sbjct: 65 RLGAR 69
>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 1007
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALFNA--GRQFCGXSIIDDKHVISAAHCV 641
RIVGG A++ +WPW L CG S+I+ + V++AAHC+
Sbjct: 432 RIVGGQTAKVEDWPWQAGLKKGLDDTIVCGGSLINREWVVTAAHCI 477
>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Frame = +3
Query: 513 IVGGHNAELNEWPWIVAL-FNAGR--QFCGXSIIDDKHVISAAHCV 641
I+GG NAE EWPW V++ N+ CG ++I V++AAHCV
Sbjct: 546 IMGGANAEHGEWPWQVSMKLNSSSLPHICGGNVISPWWVLTAAHCV 591
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 507 ERIVGGHNAELNEWPWIVAL-FNAGRQFCGXSIIDDKHVISAAHCV 641
++IVGG E WPW V + + CG SI++ + +++AAHCV
Sbjct: 1781 QQIVGGKVTEHGAWPWQVQIGYKTMGHICGGSIVNSQWIVTAAHCV 1826
>SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08)
Length = 235
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDDKHVISAAHCV 641
RI+ G A N WPW ++L G CG S++ ++AAHCV
Sbjct: 85 RIINGEEAVPNSWPWQLSLRVYGSHNCGASLLSPGWALTAAHCV 128
>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 865
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +3
Query: 462 NGPTAYGSTYDVQDEERIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDDKHVISAAHCV 641
N P + G + RIV G +A + WPW ++ G CG S++ ++AAHC+
Sbjct: 224 NDPGSCGRRSEKTPPLRIVNGEDAVPHSWPWQLSFRYKGSHICGASLLTPGWALTAAHCL 283
>SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Frame = +3
Query: 510 RIVGGHNAELNEWPW----IVALFNAGRQFCGXSIIDDKHVISAAHCV 641
RI+GG A ++WPW ++ + + CG ++ID + V++AAHCV
Sbjct: 284 RIIGGTTAAPHDWPWQAQILIHVDKSWNHRCGGTLIDTEWVVTAAHCV 331
>SB_48048| Best HMM Match : Trypsin (HMM E-Value=3.64338e-44)
Length = 348
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALF---NAGR--QFCGXSIIDDKHVISAAHC 638
RIVGG+ A WPW V ++ ++G Q CG ++I+ + V++AAHC
Sbjct: 126 RIVGGNEAGHGTWPWQVGIYRFDHSGNQMQICGGALINREWVLTAAHC 173
>SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALFNAGRQF-CGXSIIDDKHVISAAHCV 641
R+V G +A L EWPW L F CG S+I + V++A HC+
Sbjct: 61 RVVSGDDATLGEWPWQAWLHVTPHGFVCGGSLIAPQWVLTAGHCI 105
>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 347
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVAL------FNAGRQFCGXSIIDDKHVISAAHCVAHMTXWDVAR 671
RIVGG A+ WPW +++ CG S++ + +++AAHC A+ D
Sbjct: 103 RIVGGTRAKKGAWPWQISMNYVHNKVTKTPHICGGSVVAPEWIVTAAHCFAYSK--DAKD 160
Query: 672 LTARLGDYNI 701
T +G++++
Sbjct: 161 YTIAVGEHDL 170
>SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)
Length = 418
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 405 PTQPSKPSQPAVSGACGMKNGPTAYGSTYDVQDEERIVGGHNAELNEWPWIVALF-NAGR 581
P P +P++P CG+K Y S I+GG +A + EWPW V+L+
Sbjct: 235 PDTPIEPAKPKPRFDCGIK-----YTSN--------IIGGTDAAVGEWPWQVSLYLTHYG 281
Query: 582 QFCGXSIIDDKHVISAAHC 638
CG +++ + V++AA C
Sbjct: 282 PVCGGTLLTSEWVLTAARC 300
>SB_30267| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 282
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALFNAGRQF-CGXSIIDDKHVISAAHCV 641
R++ G A L EWPW L F CG S++ V++AAHC+
Sbjct: 31 RVISGSEALLGEWPWQAWLHLQHTGFICGGSLVAPGWVLTAAHCI 75
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 34.7 bits (76), Expect = 0.084
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 540 NEWPWIVALFNAGR--QFCGXSIIDDKHVISAAHC 638
+ WPW VAL +G Q CG ++I V++AAHC
Sbjct: 1248 DSWPWQVALTLSGNPVQRCGGALIAADWVLTAAHC 1282
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 33.9 bits (74), Expect = 0.15
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVAL------FNAGRQFCGXSIIDDKHVISAAHCVAH 647
RI GG ++ +PW VAL N CG ++I + V++AAHCV +
Sbjct: 1160 RIYGGSDSIPGGYPWQVALEFDTFQSNYNTFHCGGTLIAEDWVLTAAHCVVY 1211
>SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)
Length = 333
Score = 33.1 bits (72), Expect = 0.26
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 588 CGXSIIDDKHVISAAHCVAHMTXWDVARLTARL 686
C ++I HVI+AAHC+ H W V+ LTA L
Sbjct: 153 CSGTLIGPCHVITAAHCI-HNGKWFVSPLTAIL 184
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 32.7 bits (71), Expect = 0.34
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +3
Query: 435 AVSG-ACGMKNGPTAYGSTY--DVQDEERIVGGHNAELNEWPWIVALFNAG---RQFCGX 596
A+ G +C + P G D+ + G A N WPW L G + C
Sbjct: 636 AIDGFSCTKEKAPPGCGIALEADLANLAATPGWQPAHANSWPWTALLHFGGFLDIEGCMG 695
Query: 597 SIIDDKHVISAAHCV 641
+++D + +++ AHC+
Sbjct: 696 TLVDQEWIMTTAHCL 710
>SB_133| Best HMM Match : Sushi (HMM E-Value=5e-40)
Length = 607
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 510 RIVGGHNAELNEWPWIVALF--NAGRQFC-GXSIIDDKHVISAAHCV 641
RIVGG + WPW A++ + GR F ++I + V++ A+ V
Sbjct: 92 RIVGGKISAKAAWPWQAAIYYKDRGRNFLFNGALIKSRWVLTVANAV 138
>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2644
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 588 CGXSIIDDKHVISAAHCVAH 647
C ++ KHV++AAHCVA+
Sbjct: 124 CTGVLVGPKHVLTAAHCVAN 143
>SB_17196| Best HMM Match : Trypsin (HMM E-Value=0.027)
Length = 379
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +3
Query: 588 CGXSIIDDKHVISAAHCVAHMTXWDVARLTARLG 689
C ++I +HV+++AHCV + + ++ + ++G
Sbjct: 179 CTGTLISTRHVLTSAHCVHDSSEYIISAKSVKVG 212
>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 800
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 576 GRQFCGXSIIDDKHVISAAHCV 641
G CG S++ V++AAHCV
Sbjct: 336 GHHICGGSLLSSTWVLTAAHCV 357
>SB_11910| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 456
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 474 AYGSTYDVQDEERIVGGHNAELNEWPWIVALFNAGRQFCGXSIIDD 611
A G + + + V ++ NEW VA N GR+ G ++++D
Sbjct: 340 AIGGSDNRESHSNSVEVYDPSTNEWSEAVANMNNGRRCLGVAVVND 385
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,786,889
Number of Sequences: 59808
Number of extensions: 431523
Number of successful extensions: 1227
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -