Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0121
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    27   3.9  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   3.9  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.2  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    25   9.1  

>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 308 LAARNWALFSRQQYFDSKGLFISXVFSIPIL 400
           L AR W  +  + Y +++ LF + +  +P+L
Sbjct: 325 LIARAWKFYRNRNYQNARSLFFASLLHLPLL 355


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 358 QRPIYIXGVFDSYIVKLHDNGGILVVPIYSNND 456
           +R I + GV+D+ I KL++    + + +Y+ ND
Sbjct: 277 ERIIALDGVYDTIITKLYNRISTMRLGMYTQND 309


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 320 NWALFSRQQYFDSKGLFISXVFSIPILLNC 409
           +W LF R QY   + L++    +   LL+C
Sbjct: 272 SWELFGRDQYIQCQALYLIIRLTCLYLLSC 301


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 274 KEYDKKYNLKIAIIPGGETSDSNYYVK 194
           K  D  +N+ + II  G   DSN YV+
Sbjct: 26  KSVDPYFNVSLKIIQVGGREDSNVYVR 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,204
Number of Sequences: 5004
Number of extensions: 49804
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)