Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0121
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0029 - 216526-216621,216706-216854,217489-217594,218650-21...    93   3e-19
05_04_0412 + 21061706-21061846,21061963-21062078,21062276-210624...    56   2e-08
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535...    31   1.3  
03_01_0239 + 1859446-1860112,1861218-1861338,1861431-1861618,186...    28   7.2  

>08_01_0029 -
           216526-216621,216706-216854,217489-217594,218650-218841
          Length = 180

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 1/129 (0%)
 Frame = +2

Query: 122 SISDFVSXLXXIXWRDPWXIALISFH-IIITVTCFSTRNYGNFQVXXXXXXXXXVYFSEN 298
           ++  F+     + W++PW I+++ FH I++ VT  S RN  NFQ+         V+ +E 
Sbjct: 50  ALDSFLGFFHAVDWKEPWLISMLIFHAILLLVTIISRRNV-NFQLILSALTFSGVFLAER 108

Query: 299 INELAARNWALFSRQQYFDSKGLFISXVFSIPILLNCMIMVGSWLYQSTQIMTNLKKAQL 478
           IN    ++W  FS Q YFD +GLFIS V+S P+LL  ++++ + L     +M   K+A+L
Sbjct: 109 INTFLGQHWKSFSSQNYFDPQGLFISVVWSGPLLLITILILVNTLVTLCLLMVRWKRAEL 168

Query: 479 RQRLKEMNS 505
           R R +E+ +
Sbjct: 169 RHRAREVRN 177


>05_04_0412 +
           21061706-21061846,21061963-21062078,21062276-21062418,
           21062812-21062960,21063079-21063174
          Length = 214

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/69 (37%), Positives = 41/69 (59%)
 Frame = +2

Query: 281 VYFSENINELAARNWALFSRQQYFDSKGLFISXVFSIPILLNCMIMVGSWLYQSTQIMTN 460
           VY +E IN   A +W   + + YFD  G+F+S V+S P++   M++V S L    ++M  
Sbjct: 137 VYLAEKINSYMAEHWKSIATRNYFDRAGVFVSVVWSGPLIFISMVIVVSSLITLCRLMVK 196

Query: 461 LKKAQLRQR 487
            K+A+LR R
Sbjct: 197 WKRAELRHR 205


>04_04_1122 + 31052497-31052629,31053133-31053191,31053285-31053579,
            31054099-31054279,31054739-31054956,31055522-31055739,
            31055842-31055958,31056106-31056128,31056223-31056438,
            31056536-31056677,31056822-31057067,31057659-31057856,
            31058331-31058379,31060835-31060911,31061266-31061551,
            31061661-31061841,31062149-31062344,31062630-31062738,
            31062861-31062961,31063155-31063267,31063347-31063442,
            31063531-31063746,31063857-31063995,31064087-31064332,
            31064605-31064940
          Length = 1396

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 401  LNCMIMVGSWLYQSTQIMTNLKKAQLRQRLKEMN 502
            LNC+++  SWL +  +IM ++    +  RL  MN
Sbjct: 942  LNCLLVCSSWLERDEEIMLDITTCAMAFRLLRMN 975


>03_01_0239 +
           1859446-1860112,1861218-1861338,1861431-1861618,
           1861710-1861804
          Length = 356

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 164 RDPWXIALISFHIIITVTCF 223
           R  W +++ISFH+++ + CF
Sbjct: 336 RSMWSMSVISFHMVLIIICF 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,346,022
Number of Sequences: 37544
Number of extensions: 263168
Number of successful extensions: 512
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)