Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0121
         (773 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC032379-1|AAH32379.1|  127|Homo sapiens TMEM18 protein protein.      114   3e-25
BC016010-1|AAH16010.2|  140|Homo sapiens transmembrane protein 1...   114   3e-25
AL137269-1|CAB70668.1|  171|Homo sapiens hypothetical protein pr...   114   3e-25
AC092159-1|AAY14770.1|  127|Homo sapiens unknown protein.             114   3e-25

>BC032379-1|AAH32379.1|  127|Homo sapiens TMEM18 protein protein.
          Length = 127

 Score =  114 bits (275), Expect = 3e-25
 Identities = 52/113 (46%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
 Frame = +2

Query: 161 WRDPWXIALISFHII-ITVTCFSTRNYGNFQVXXXXXXXXXVYFSENINELAARNWALFS 337
           W +PW + L +FH + + +TC S+R+Y   Q+         VY +E INE AA NW LFS
Sbjct: 10  WTEPWLMGLATFHALCVLLTCLSSRSY-RLQIGHFLCLVILVYCAEYINEAAAMNWRLFS 68

Query: 338 RQQYFDSKGLFISXVFSIPILLNCMIMVGSWLYQSTQIMTNLKKAQLRQRLKE 496
           + QYFDS+G+FIS VFS P+L+N MI+V  W++++  +MT+LK AQ R++ K+
Sbjct: 69  KYQYFDSRGMFISIVFSAPLLVNAMIIVVMWVWKTLNVMTDLKNAQERRKEKK 121


>BC016010-1|AAH16010.2|  140|Homo sapiens transmembrane protein 18
           protein.
          Length = 140

 Score =  114 bits (275), Expect = 3e-25
 Identities = 52/113 (46%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
 Frame = +2

Query: 161 WRDPWXIALISFHII-ITVTCFSTRNYGNFQVXXXXXXXXXVYFSENINELAARNWALFS 337
           W +PW + L +FH + + +TC S+R+Y   Q+         VY +E INE AA NW LFS
Sbjct: 23  WTEPWLMGLATFHALCVLLTCLSSRSY-RLQIGHFLCLVILVYCAEYINEAAAMNWRLFS 81

Query: 338 RQQYFDSKGLFISXVFSIPILLNCMIMVGSWLYQSTQIMTNLKKAQLRQRLKE 496
           + QYFDS+G+FIS VFS P+L+N MI+V  W++++  +MT+LK AQ R++ K+
Sbjct: 82  KYQYFDSRGMFISIVFSAPLLVNAMIIVVMWVWKTLNVMTDLKNAQERRKEKK 134


>AL137269-1|CAB70668.1|  171|Homo sapiens hypothetical protein
           protein.
          Length = 171

 Score =  114 bits (275), Expect = 3e-25
 Identities = 52/113 (46%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
 Frame = +2

Query: 161 WRDPWXIALISFHII-ITVTCFSTRNYGNFQVXXXXXXXXXVYFSENINELAARNWALFS 337
           W +PW + L +FH + + +TC S+R+Y   Q+         VY +E INE AA NW LFS
Sbjct: 54  WTEPWLMGLATFHALCVLLTCLSSRSY-RLQIGHFLCLVILVYCAEYINEAAAMNWRLFS 112

Query: 338 RQQYFDSKGLFISXVFSIPILLNCMIMVGSWLYQSTQIMTNLKKAQLRQRLKE 496
           + QYFDS+G+FIS VFS P+L+N MI+V  W++++  +MT+LK AQ R++ K+
Sbjct: 113 KYQYFDSRGMFISIVFSAPLLVNAMIIVVMWVWKTLNVMTDLKNAQERRKEKK 165


>AC092159-1|AAY14770.1|  127|Homo sapiens unknown protein.
          Length = 127

 Score =  114 bits (275), Expect = 3e-25
 Identities = 52/113 (46%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
 Frame = +2

Query: 161 WRDPWXIALISFHII-ITVTCFSTRNYGNFQVXXXXXXXXXVYFSENINELAARNWALFS 337
           W +PW + L +FH + + +TC S+R+Y   Q+         VY +E INE AA NW LFS
Sbjct: 10  WTEPWLMGLATFHALCVLLTCLSSRSY-RLQIGHFLCLVILVYCAEYINEAAAMNWRLFS 68

Query: 338 RQQYFDSKGLFISXVFSIPILLNCMIMVGSWLYQSTQIMTNLKKAQLRQRLKE 496
           + QYFDS+G+FIS VFS P+L+N MI+V  W++++  +MT+LK AQ R++ K+
Sbjct: 69  KYQYFDSRGMFISIVFSAPLLVNAMIIVVMWVWKTLNVMTDLKNAQERRKEKK 121


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,546,548
Number of Sequences: 237096
Number of extensions: 1575973
Number of successful extensions: 2590
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2585
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)