Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0121
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77661-3|CAB01187.2|  264|Caenorhabditis elegans Hypothetical pr...    34   0.13 
Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical p...    28   8.5  
U88177-6|AAB42293.1|  446|Caenorhabditis elegans Acetylcholine r...    28   8.5  
U88177-5|AAT48618.1|  515|Caenorhabditis elegans Acetylcholine r...    28   8.5  
AY523512-1|AAR98634.1|  499|Caenorhabditis elegans acetylcholine...    28   8.5  
AF160248-1|AAD45518.1|  860|Caenorhabditis elegans ribonuclease ...    28   8.5  

>Z77661-3|CAB01187.2|  264|Caenorhabditis elegans Hypothetical
           protein F40G12.4 protein.
          Length = 264

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 384 NTXDINRPLLSKYCCLENNAQFLAASSFIFSEKYTSKRSMIKSIT 250
           NT D   P LSKY CLEN + F     ++      S R  ++++T
Sbjct: 194 NTIDKELPDLSKYRCLENRSFFKKTPEYMCERYRNSNRECLRAVT 238


>Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical
           protein F26E4.10 protein.
          Length = 1086

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 729 LTFNKLIYNEFHYHHQGHPITYRFKLTS 646
           L  +  +Y  F YHH+GH    R  L S
Sbjct: 882 LIVSDFLYRRFPYHHEGHMSLLRTSLVS 909


>U88177-6|AAB42293.1|  446|Caenorhabditis elegans Acetylcholine
           receptor protein17, isoform a protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 407 CMIMVGSWLYQSTQIMTN 460
           C IM+ SW Y  +QIM N
Sbjct: 164 CFIMLASWSYDGSQIMLN 181


>U88177-5|AAT48618.1|  515|Caenorhabditis elegans Acetylcholine
           receptor protein17, isoform b protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 407 CMIMVGSWLYQSTQIMTN 460
           C IM+ SW Y  +QIM N
Sbjct: 164 CFIMLASWSYDGSQIMLN 181


>AY523512-1|AAR98634.1|  499|Caenorhabditis elegans acetylcholine
           receptor, nicotinic,alpha 9 like (58.1 kD) alternative
           variant a protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 407 CMIMVGSWLYQSTQIMTN 460
           C IM+ SW Y  +QIM N
Sbjct: 148 CFIMLASWSYDGSQIMLN 165


>AF160248-1|AAD45518.1|  860|Caenorhabditis elegans ribonuclease
           protein.
          Length = 860

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 729 LTFNKLIYNEFHYHHQGHPITYRFKLTS 646
           L  +  +Y  F YHH+GH    R  L S
Sbjct: 656 LIVSDFLYRRFPYHHEGHMSLLRTSLVS 683


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,432,662
Number of Sequences: 27780
Number of extensions: 276636
Number of successful extensions: 607
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)