Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0121
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.78 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.2  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   7.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 398 LLNCMIMVGSWLYQSTQIMTN 460
           +LNC I + SW + S +I  N
Sbjct: 170 ILNCTIHIASWSHGSNEIKLN 190


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 670 YWMPLVVIMKLVIDKLIKCQR 732
           YW PLVVI+      L++ +R
Sbjct: 213 YWFPLVVIIYTYTSILLEIRR 233


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 271 EYDKKYNLKIAIIPG 227
           +YD K NLK+ + PG
Sbjct: 429 QYDLKKNLKVCLPPG 443


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 480 LNCAFFKLVII*VDWYNQDPTIIMQFN 400
           L C FF L +I +  Y   PT+ ++ N
Sbjct: 5   LRCTFFFLSVILITSYFVTPTMSIKCN 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,640
Number of Sequences: 438
Number of extensions: 3812
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)