Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0119
         (724 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    68   3e-10
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    43   0.009
UniRef50_Q1CVV5 Cluster: Putative lipoprotein; n=1; Myxococcus x...    33   9.4  
UniRef50_Q4XUT2 Cluster: Putative uncharacterized protein; n=3; ...    33   9.4  
UniRef50_A2EG16 Cluster: IQ calmodulin-binding motif family prot...    33   9.4  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 67.7 bits (158), Expect = 3e-10
 Identities = 33/58 (56%), Positives = 37/58 (63%)
 Frame = +3

Query: 78   YELMPXXXXXXXXXXXXXXVHPCYLEPL*S*TVRFQRSFLPCTMRLWNEFPSTVFQTR 251
            +E++P              VHP YLEPL S TVRFQRSFLP T+RLWNE PSTVF  R
Sbjct: 896  FEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPER 953


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 42.7 bits (96), Expect = 0.009
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +3

Query: 315 MGDGNHSPSGGPYACLPTKAIKK 383
           MGDGNHSPSG PYA LPT+A  K
Sbjct: 1   MGDGNHSPSGRPYASLPTRAKMK 23


>UniRef50_Q1CVV5 Cluster: Putative lipoprotein; n=1; Myxococcus
           xanthus DK 1622|Rep: Putative lipoprotein - Myxococcus
           xanthus (strain DK 1622)
          Length = 351

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 367 VGRQAYGPPDGEWLPS-PMDVSNAAKQSHAAG 275
           V R+  GPP G W PS P   S AAK S  AG
Sbjct: 206 VARRRPGPPPGAWAPSRPSGRSGAAKPSRPAG 237


>UniRef50_Q4XUT2 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 667

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 22/64 (34%), Positives = 33/64 (51%)
 Frame = +1

Query: 424 TLKIYLRNFKKRNFNAAKATLKFIFVFKIYS*IKAYIPRSDQTHLFCIYQNSS*RNILIK 603
           T  IYL  FK  N      +L++I  F ++S  K Y   +D+ H+F     S  +N LIK
Sbjct: 459 TKNIYLNKFK--NKKGKNISLQYISNF-LFSYNKKYDENNDEAHIFPSLDQSVDKNELIK 515

Query: 604 LYNY 615
            Y++
Sbjct: 516 HYSH 519


>UniRef50_A2EG16 Cluster: IQ calmodulin-binding motif family
           protein; n=1; Trichomonas vaginalis G3|Rep: IQ
           calmodulin-binding motif family protein - Trichomonas
           vaginalis G3
          Length = 1235

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 397 NYKIPSHFITLKIYLRNFKKRNFNAAKATLKFIFVFKIYS*IKAYIPRSD 546
           NY    H   ++ YLR F   NF   K   K+ F  KI S  + Y+ R +
Sbjct: 188 NYVKYMHATGMERYLRRFNAENFCLNKVLRKYSFAEKIQSNFRGYVQRKE 237


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,010,967
Number of Sequences: 1657284
Number of extensions: 13408642
Number of successful extensions: 28876
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28866
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)