Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0119
         (724 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   3.3  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   3.3  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    22   5.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.8  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   7.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   7.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   7.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   7.6  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 160 CDHRQCVSRDLFC 198
           CD  QCV  D FC
Sbjct: 155 CDPTQCVLPDCFC 167



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 160 CDHRQCVSRDLFC 198
           C + +C+ ++LFC
Sbjct: 116 CGNGECIDKELFC 128


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 160 CDHRQCVSRDLFC 198
           CD  QCV  D FC
Sbjct: 162 CDPTQCVLPDCFC 174



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 160 CDHRQCVSRDLFC 198
           C + +C+ ++LFC
Sbjct: 123 CGNGECIDKELFC 135


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 403 KIPSHFITLKIYLRNFKKRNFNAAKATLKFI 495
           KIP++   + +  R F K       + LKFI
Sbjct: 57  KIPNNVNLMDVVAREFDKIQVGDVSSVLKFI 87


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 318 GDGNHSPSGGP 350
           G GN+ P GGP
Sbjct: 530 GSGNNQPPGGP 540


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 120 GWCDGKNEMTASIHKNNTAYSAASSTFS 37
           G C  KN +   ++ N  +YS    T S
Sbjct: 378 GLCGPKNPLINILYANMNSYSVPEPTIS 405


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 108 GKNEMTASIHKNNTAYSAASSTFSRVNNEVSFHEV 4
           G N  T S   NNT ++  S+  S V +   F ++
Sbjct: 126 GNNNNTPSATNNNTNFNNNSNGASSVGSSSPFDKL 160


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 108 GKNEMTASIHKNNTAYSAASSTFSRVNNEVSFHEV 4
           G N  T S   NNT ++  S+  S V +   F ++
Sbjct: 74  GNNNNTPSATNNNTNFNNNSNGASSVGSSSPFDKL 108


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 108 GKNEMTASIHKNNTAYSAASSTFSRVNNEVSFHEV 4
           G N  T S   NNT ++  S+  S V +   F ++
Sbjct: 257 GNNNNTPSATNNNTNFNNNSNGASSVGSSSPFDKL 291


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,981
Number of Sequences: 336
Number of extensions: 3660
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)