Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0119
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    27   2.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   4.7  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   8.3  

>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 297 AALLTSMGDGNHSPSGGPYACLPTKAIKKDFY 392
           A +++S GD + S     YA +P   +K DF+
Sbjct: 184 ALVISSFGDSSVSKISQAYAMMPLPVLKADFF 215


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 177 RFQRSFLPCTMRLWNEFPSTVFQTR 251
           +F+ S   CT++L+ + PS ++QTR
Sbjct: 336 QFESSIPICTLQLFMDCPSELYQTR 360


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 64  CCVIFMN*CRHLVLTIAPPATGVEFIRATWN 156
           C   F N   ++ L +A P TG++    TWN
Sbjct: 98  CMEAFRNESIYVFLDLANPKTGIDRDTPTWN 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,730
Number of Sequences: 5004
Number of extensions: 57675
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)