Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0119
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)             30   2.2  
SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0)                       30   2.2  
SB_17697| Best HMM Match : JmjC (HMM E-Value=2.4e-11)                  29   2.9  

>SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)
          Length = 231

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 180 FQRSFLPCTMRLWNEFPSTVFQTR 251
           ++ SFLP  +RLWN  P +V   R
Sbjct: 198 YKYSFLPRALRLWNNLPQSVIDMR 221


>SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 180 FQRSFLPCTMRLWNEFPSTVFQTR 251
           ++ SFLP  +RLWN  P +V   R
Sbjct: 199 YKYSFLPRALRLWNNLPQSVIDMR 222


>SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1410

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 385  ISIVNYKIPSHFITL-KIYLRNFKKRNFNAAKATLKFIF 498
            I+IVN+ IPS  ITL ++ L +F++  F+     + FIF
Sbjct: 1201 INIVNFVIPSFIITLDEVELVHFERVQFHLKNFDMVFIF 1239


>SB_17697| Best HMM Match : JmjC (HMM E-Value=2.4e-11)
          Length = 1054

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 183 GNA-LSMITVVPGSTDELYSGGGWCDGKNEMTASIHKNNTAYSAASSTFSRVN 28
           GN  +S IT VPG T    +G G C G    TAS+  +    + A     RVN
Sbjct: 269 GNVPVSAITSVPGQTG--CTGNGGCTGIGSGTASVVTSKAVENVARQQVIRVN 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,433,315
Number of Sequences: 59808
Number of extensions: 438523
Number of successful extensions: 964
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)